RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 TTLL7Q6ZT98 887 aa29.01■■■□□ 2.23
SHMT1-210ENST00000583780 JDP2Q8WYK2 163 aa29.01■■■□□ 2.23
SHMT1-210ENST00000583780 CC2D2BQ6DHV5 1058 aa29■■■□□ 2.23
SHMT1-210ENST00000583780 SLC51AQ86UW1 340 aa29■■■□□ 2.23
SHMT1-210ENST00000583780 NYXQ9GZU5 481 aa29■■■□□ 2.23
SHMT1-210ENST00000583780 MAP3K15Q6ZN16 1313 aa28.99■■■□□ 2.23
SHMT1-210ENST00000583780 WDR33Q9C0J8 1336 aaKnown RBP28.98■■■□□ 2.23
SHMT1-210ENST00000583780 FMR1Q06787 632 aaKnown RBP eCLIP28.98■■■□□ 2.23
SHMT1-210ENST00000583780 RRP7AQ9Y3A4 280 aaKnown RBP28.98■■■□□ 2.23
SHMT1-210ENST00000583780 KDM3BQ7LBC6 1761 aa28.98■■■□□ 2.23
SHMT1-210ENST00000583780 HSPA8P11142 646 aaKnown RBP28.97■■■□□ 2.23
SHMT1-210ENST00000583780 EIF4A1P60842 406 aaKnown RBP28.97■■■□□ 2.23
SHMT1-210ENST00000583780 SUSD4Q5VX71 490 aa28.97■■■□□ 2.23
SHMT1-210ENST00000583780 DDX21Q9NR30 783 aaKnown RBP eCLIP28.97■■■□□ 2.23
SHMT1-210ENST00000583780 GJA3Q9Y6H8 435 aa28.97■■■□□ 2.23
SHMT1-210ENST00000583780 UBN2Q6ZU65 1347 aa28.96■■■□□ 2.23
SHMT1-210ENST00000583780 EPS15P42566 896 aa28.96■■■□□ 2.23
SHMT1-210ENST00000583780 SCNN1DP51172 638 aa28.96■■■□□ 2.23
SHMT1-210ENST00000583780 EIF6P56537 245 aaKnown RBP28.96■■■□□ 2.23
SHMT1-210ENST00000583780 ZNF34Q8IZ26 560 aa28.95■■■□□ 2.22
SHMT1-210ENST00000583780 CRAMP1Q96RY5 1269 aa28.95■■■□□ 2.22
SHMT1-210ENST00000583780 GPTP24298 496 aa28.94■■■□□ 2.22
SHMT1-210ENST00000583780 PNISRQ8TF01 805 aaKnown RBP28.94■■■□□ 2.22
SHMT1-210ENST00000583780 GRIPAP1Q4V328 841 aa28.93■■■□□ 2.22
SHMT1-210ENST00000583780 C3orf67Q6ZVT6 689 aa28.93■■■□□ 2.22
SHMT1-210ENST00000583780 RPGRQ92834 1020 aaKnown RBP28.93■■■□□ 2.22
SHMT1-210ENST00000583780 ABT1Q9ULW3 272 aaKnown RBP28.93■■■□□ 2.22
SHMT1-210ENST00000583780 RIC1Q4ADV7 1423 aa28.93■■■□□ 2.22
SHMT1-210ENST00000583780 MYL6BP14649 208 aa28.92■■■□□ 2.22
SHMT1-210ENST00000583780 MAP2K1Q02750 393 aaPredicted RBP28.92■■■□□ 2.22
SHMT1-210ENST00000583780 LARGE2Q8N3Y3 721 aa28.92■■■□□ 2.22
SHMT1-210ENST00000583780 PLEKHF1Q96S99 279 aa28.92■■■□□ 2.22
SHMT1-210ENST00000583780 ZBTB3Q9H5J0 574 aa28.92■■■□□ 2.22
SHMT1-210ENST00000583780 TRPM7Q96QT4 1865 aa28.91■■■□□ 2.22
SHMT1-210ENST00000583780 IBTKQ9P2D0 1353 aaPredicted RBP28.91■■■□□ 2.22
SHMT1-210ENST00000583780 CST9Q5W186 159 aa28.91■■■□□ 2.22
SHMT1-210ENST00000583780 KIF6Q6ZMV9 814 aa28.91■■■□□ 2.22
SHMT1-210ENST00000583780 RBM17Q96I25 401 aaKnown RBP28.91■■■□□ 2.22
SHMT1-210ENST00000583780 TCERG1O14776 1098 aaKnown RBP28.9■■■□□ 2.22
SHMT1-210ENST00000583780 NTSR2O95665 410 aa28.9■■■□□ 2.22
SHMT1-210ENST00000583780 LMOD1P29536 600 aaPredicted RBP28.9■■■□□ 2.22
SHMT1-210ENST00000583780 THUMPD2Q9BTF0 503 aaKnown RBP28.9■■■□□ 2.22
SHMT1-210ENST00000583780 GIGYF2Q6Y7W6 1299 aaKnown RBP28.89■■■□□ 2.22
SHMT1-210ENST00000583780 PPEF1O14829 653 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-210ENST00000583780 USP50Q70EL3 339 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-210ENST00000583780 TRAF5O00463 557 aa28.87■■■□□ 2.21
SHMT1-210ENST00000583780 SLC10A5Q5PT55 438 aa28.87■■■□□ 2.21
SHMT1-210ENST00000583780 LRP10Q7Z4F1 713 aa28.87■■■□□ 2.21
SHMT1-210ENST00000583780 ABHD8Q96I13 439 aa28.87■■■□□ 2.21
SHMT1-210ENST00000583780 CAPNS2Q96L46 248 aa28.87■■■□□ 2.21
SHMT1-210ENST00000583780 CYP4F22Q6NT55 531 aa28.85■■■□□ 2.21
SHMT1-210ENST00000583780 PDIA6Q15084 440 aa28.84■■■□□ 2.21
SHMT1-210ENST00000583780 NFE2L2Q16236 605 aa28.84■■■□□ 2.21
SHMT1-210ENST00000583780 NIM1KQ8IY84 436 aa28.84■■■□□ 2.21
SHMT1-210ENST00000583780 GPR101Q96P66 508 aaPredicted RBP28.84■■■□□ 2.21
SHMT1-210ENST00000583780 ATP6V0A2Q9Y487 856 aa28.84■■■□□ 2.21
SHMT1-210ENST00000583780 THSD7BQ9C0I4 1608 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 AOC3Q16853 763 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 PPP1R42Q7Z4L9 355 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 NLRP3Q96P20 1036 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 VPS33BQ9H267 617 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 GPRC5DQ9NZD1 345 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 TLL2Q9Y6L7 1015 aa28.83■■■□□ 2.21
SHMT1-210ENST00000583780 PPIP5K2O43314 1243 aa28.82■■■□□ 2.2
SHMT1-210ENST00000583780 CXCL9Q07325 125 aa28.82■■■□□ 2.2
SHMT1-210ENST00000583780 ERBB4Q15303 1308 aa28.82■■■□□ 2.2
SHMT1-210ENST00000583780 ECE1P42892 770 aa28.81■■■□□ 2.2
SHMT1-210ENST00000583780 PARP10Q53GL7 1025 aa28.81■■■□□ 2.2
SHMT1-210ENST00000583780 RTFDC1Q9BY42 306 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-210ENST00000583780 NEFMP07197 916 aa28.8■■■□□ 2.2
SHMT1-210ENST00000583780 ADARB2Q9NS39 739 aaKnown RBP28.8■■■□□ 2.2
SHMT1-210ENST00000583780 PGAP2Q9UHJ9 254 aa28.79■■■□□ 2.2
SHMT1-210ENST00000583780 ZNRF3Q9ULT6 936 aa28.79■■■□□ 2.2
SHMT1-210ENST00000583780 PAXIP1Q6ZW49 1069 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-210ENST00000583780 UTP14AQ9BVJ6 771 aaKnown RBP28.78■■■□□ 2.2
SHMT1-210ENST00000583780 ABCC4O15439 1325 aa28.77■■■□□ 2.2
SHMT1-210ENST00000583780 AOC2O75106 756 aa28.77■■■□□ 2.2
SHMT1-210ENST00000583780 GRM1Q13255 1194 aa28.77■■■□□ 2.2
SHMT1-210ENST00000583780 PROSER3Q2NL68 480 aa28.77■■■□□ 2.2
SHMT1-210ENST00000583780 LAMB2P55268 1798 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 ANXA1P04083 346 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 MAP2K2P36507 400 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 SAPCD2Q86UD0 394 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 SP8Q8IXZ3 490 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 TAF1P21675 1872 aa28.76■■■□□ 2.19
SHMT1-210ENST00000583780 BBOX1O75936 387 aa28.75■■■□□ 2.19
SHMT1-210ENST00000583780 EIF2S2P20042 333 aaKnown RBP28.75■■■□□ 2.19
SHMT1-210ENST00000583780 GMPSP49915 693 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-210ENST00000583780 HIRAP54198 1017 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-210ENST00000583780 ANKRD36CQ5JPF3 1778 aa28.75■■■□□ 2.19
SHMT1-210ENST00000583780 SUPT20HQ8NEM7 779 aa28.74■■■□□ 2.19
SHMT1-210ENST00000583780 BEGAINQ9BUH8 593 aa28.74■■■□□ 2.19
SHMT1-210ENST00000583780 GLIS2Q9BZE0 524 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-210ENST00000583780 TMX4Q9H1E5 349 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-210ENST00000583780 TSPYL4Q9UJ04 414 aa28.73■■■□□ 2.19
SHMT1-210ENST00000583780 TSKSQ9UJT2 592 aa28.73■■■□□ 2.19
SHMT1-210ENST00000583780 CASP8AP2Q9UKL3 1982 aa28.72■■■□□ 2.19
SHMT1-210ENST00000583780 CELF2O95319 508 aaKnown RBP28.72■■■□□ 2.19
SHMT1-210ENST00000583780 KIAA2012Q0VF49 1180 aa28.72■■■□□ 2.19
SHMT1-210ENST00000583780 FAM161AQ3B820 660 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms