RNA–Protein interactions for RNA: ENST00000582955.5

SMARCE1-218, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 621 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-218ENST00000582955 UTP14AQ9BVJ6 771 aaKnown RBP16.2■□□□□ 0.18
SMARCE1-218ENST00000582955 DDX58O95786 925 aaKnown RBP16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 SRGNP10124 158 aa16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 STYK1Q6J9G0 422 aa16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 NLRP10Q86W26 655 aa16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 ZNF428Q96B54 188 aa16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 MASTLQ96GX5 879 aa16.19■□□□□ 0.18
SMARCE1-218ENST00000582955 ARFGEF2Q9Y6D5 1785 aa16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 ATP5J2-PTCD1G3V325 749 aa16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 VAMP4O75379 141 aa16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 NPR1P16066 1061 aa16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 CNKSR1Q969H4 720 aa16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 RNF216Q9NWF9 866 aaPredicted RBP16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 ZNF219Q9P2Y4 722 aaPredicted RBP16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 TNRC6CQ9HCJ0 1690 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-218ENST00000582955 E9PSI1 815 aa16.17■□□□□ 0.18
SMARCE1-218ENST00000582955 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
SMARCE1-218ENST00000582955 CNKSR2Q8WXI2 1034 aa16.17■□□□□ 0.18
SMARCE1-218ENST00000582955 TRMT112Q9UI30 125 aaKnown RBP16.17■□□□□ 0.18
SMARCE1-218ENST00000582955 KLRG2A4D1S0 409 aaPredicted RBP16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 PRPF40BQ6NWY9 871 aaKnown RBP16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 MYD88Q99836 296 aa16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 ISCA1Q9BUE6 129 aa16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 RIC1Q4ADV7 1423 aa16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 CACNA1SQ13698 1873 aa16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 RNF123Q5XPI4 1314 aa16.16■□□□□ 0.18
SMARCE1-218ENST00000582955 C21orf2O43822 256 aa16.15■□□□□ 0.18
SMARCE1-218ENST00000582955 G2E3Q7L622 706 aa16.15■□□□□ 0.18
SMARCE1-218ENST00000582955 RPGRQ92834 1020 aaKnown RBP16.15■□□□□ 0.18
SMARCE1-218ENST00000582955 MAP3K2Q9Y2U5 619 aa16.15■□□□□ 0.18
SMARCE1-218ENST00000582955 SH3TC1Q8TE82 1336 aa16.15■□□□□ 0.18
SMARCE1-218ENST00000582955 PI4KAP2A4QPH2 592 aa16.14■□□□□ 0.17
SMARCE1-218ENST00000582955 KSR2Q6VAB6 950 aa16.14■□□□□ 0.17
SMARCE1-218ENST00000582955 PI4KAP1Q8N8J0 262 aa16.14■□□□□ 0.17
SMARCE1-218ENST00000582955 NLRP3Q96P20 1036 aa16.14■□□□□ 0.17
SMARCE1-218ENST00000582955 HCLS1P14317 486 aaPredicted RBP16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 RASSF7Q02833 373 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 SLFN5Q08AF3 891 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 FLIIQ13045 1269 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 FKBP5Q13451 457 aaPredicted RBP16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 CRY2Q49AN0 593 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 C3orf67Q6ZVT6 689 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 SYNE4Q8N205 404 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 ZNF784Q8NCA9 323 aaPredicted RBP16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 CDCA7LQ96GN5 454 aa16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 METTL22Q9BUU2 404 aaPredicted RBP16.13■□□□□ 0.17
SMARCE1-218ENST00000582955 SLX4Q8IY92 1834 aa16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 ALDH1B1P30837 517 aa16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 TRIM28Q13263 835 aaKnown RBP16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 RTL5Q5HYW3 569 aaPredicted RBP16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 SLC10A5Q5PT55 438 aa16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 FAM89AQ96GI7 184 aa16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 ADCY9O60503 1353 aa16.12■□□□□ 0.17
SMARCE1-218ENST00000582955 NEXNQ0ZGT2 675 aa16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 SOGA3Q5TF21 947 aa16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 C9orf131Q5VYM1 1079 aa16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 RBM17Q96I25 401 aaKnown RBP16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 CWC25Q9NXE8 425 aaPredicted RBP16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 RNF181Q9P0P0 153 aa16.11■□□□□ 0.17
SMARCE1-218ENST00000582955 CCDC191Q8NCU4 936 aa16.1■□□□□ 0.17
SMARCE1-218ENST00000582955 CACNA1FO60840 1977 aa16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 NFKBIEO00221 500 aa16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 HOXA10P31260 410 aaPredicted RBP16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 HNRNPUQ00839 825 aaKnown RBP eCLIP16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 CCDC93Q567U6 631 aa16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 ZBTB38Q8NAP3 1195 aaPredicted RBP16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 ZNF526Q8TF50 670 aaPredicted RBP16.09■□□□□ 0.17
SMARCE1-218ENST00000582955 IRS4O14654 1257 aaPredicted RBP16.08■□□□□ 0.16
SMARCE1-218ENST00000582955 C7orf43Q8WVR3 580 aa16.08■□□□□ 0.16
SMARCE1-218ENST00000582955 DNAAF4Q8WXU2 420 aa16.08■□□□□ 0.16
SMARCE1-218ENST00000582955 CRAMP1Q96RY5 1269 aa16.08■□□□□ 0.16
SMARCE1-218ENST00000582955 LAMB2P55268 1798 aa16.08■□□□□ 0.16
SMARCE1-218ENST00000582955 PPEF1O14829 653 aaPredicted RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 PCCAP05165 728 aaPredicted RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 IGKV5-2P06315 115 aa16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 LMNB1P20700 586 aa16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 CWF19L2Q2TBE0 894 aaKnown RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 OLFM4Q6UX06 510 aa16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 DDX46Q7L014 1031 aaKnown RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 JARID2Q92833 1246 aaPredicted RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 TAOK3Q9H2K8 898 aa16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 DDX60Q8IY21 1712 aaKnown RBP16.07■□□□□ 0.16
SMARCE1-218ENST00000582955 FER1L6Q2WGJ9 1857 aa16.06■□□□□ 0.16
SMARCE1-218ENST00000582955 ABCC4O15439 1325 aa16.06■□□□□ 0.16
SMARCE1-218ENST00000582955 NEURL1BA8MQ27 555 aa16.06■□□□□ 0.16
SMARCE1-218ENST00000582955 HSP90B1P14625 803 aaKnown RBP16.06■□□□□ 0.16
SMARCE1-218ENST00000582955 TRMT2AQ8IZ69 625 aaKnown RBP16.06■□□□□ 0.16
SMARCE1-218ENST00000582955 SBF1O95248 1867 aa16.05■□□□□ 0.16
SMARCE1-218ENST00000582955 F6X3S4 739 aa16.05■□□□□ 0.16
SMARCE1-218ENST00000582955 PRELPP51888 382 aa16.05■□□□□ 0.16
SMARCE1-218ENST00000582955 TMX4Q9H1E5 349 aaPredicted RBP16.05■□□□□ 0.16
SMARCE1-218ENST00000582955 GPBP1L1Q9HC44 474 aaPredicted RBP16.05■□□□□ 0.16
SMARCE1-218ENST00000582955 LTBP3Q9NS15 1303 aa16.04■□□□□ 0.16
SMARCE1-218ENST00000582955 RTKN2Q8IZC4 609 aa16.04■□□□□ 0.16
SMARCE1-218ENST00000582955 MRPL50Q8N5N7 158 aaKnown RBP16.04■□□□□ 0.16
SMARCE1-218ENST00000582955 LINS1Q8NG48 757 aa16.04■□□□□ 0.16
SMARCE1-218ENST00000582955 BCL2L13Q9BXK5 485 aa16.04■□□□□ 0.16
SMARCE1-218ENST00000582955 PDE8AO60658 829 aa16.03■□□□□ 0.16
SMARCE1-218ENST00000582955 FKBP4Q02790 459 aaKnown RBP eCLIP16.03■□□□□ 0.16
SMARCE1-218ENST00000582955 GRAPQ13588 217 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms