RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 API5Q9BZZ5 524 aaKnown RBP19.68■□□□□ 0.74
SS18-216ENST00000580751 FHDC1Q9C0D6 1143 aaPredicted RBP19.68■□□□□ 0.74
SS18-216ENST00000580751 NOB1Q9ULX3 412 aaKnown RBP19.68■□□□□ 0.74
SS18-216ENST00000580751 SUPT16HQ9Y5B9 1047 aaKnown RBP19.68■□□□□ 0.74
SS18-216ENST00000580751 NTSR2O95665 410 aa19.67■□□□□ 0.74
SS18-216ENST00000580751 LINS1Q8NG48 757 aa19.67■□□□□ 0.74
SS18-216ENST00000580751 CWC25Q9NXE8 425 aaPredicted RBP19.67■□□□□ 0.74
SS18-216ENST00000580751 TRMT112Q9UI30 125 aaKnown RBP19.66■□□□□ 0.74
SS18-216ENST00000580751 NEURL1BA8MQ27 555 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 IGKV5-2P06315 115 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 NEFLP07196 543 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 SLC4A10Q6U841 1118 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 FRAT1Q92837 279 aaPredicted RBP19.65■□□□□ 0.74
SS18-216ENST00000580751 BRIP1Q9BX63 1249 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 SH3TC1Q8TE82 1336 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 RIC1Q4ADV7 1423 aa19.65■□□□□ 0.74
SS18-216ENST00000580751 CWF19L2Q2TBE0 894 aaKnown RBP19.64■□□□□ 0.73
SS18-216ENST00000580751 BEND3Q5T5X7 828 aa19.64■□□□□ 0.73
SS18-216ENST00000580751 NUTM1Q86Y26 1132 aa19.64■□□□□ 0.73
SS18-216ENST00000580751 SYT17Q9BSW7 474 aa19.64■□□□□ 0.73
SS18-216ENST00000580751 PDZRN3Q9UPQ7 1066 aa19.64■□□□□ 0.73
SS18-216ENST00000580751 ABCC12Q96J65 1359 aa19.64■□□□□ 0.73
SS18-216ENST00000580751 ALDH1L1O75891 902 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 PDE6BP35913 854 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 RRP1P56182 461 aaKnown RBP19.63■□□□□ 0.73
SS18-216ENST00000580751 TGFB2P61812 414 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ERFEQ4G0M1 354 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ERICH6BQ5W0A0 696 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ZKSCAN2Q63HK3 967 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ATF7IPQ6VMQ6 1270 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ZBTB38Q8NAP3 1195 aaPredicted RBP19.63■□□□□ 0.73
SS18-216ENST00000580751 SRCIN1Q9C0H9 1055 aa19.63■□□□□ 0.73
SS18-216ENST00000580751 ANKRD31Q8N7Z5 1873 aa19.62■□□□□ 0.73
SS18-216ENST00000580751 N4BP2Q86UW6 1770 aaPredicted RBP19.62■□□□□ 0.73
SS18-216ENST00000580751 PCCAP05165 728 aaPredicted RBP19.62■□□□□ 0.73
SS18-216ENST00000580751 HSP90B1P14625 803 aaKnown RBP19.62■□□□□ 0.73
SS18-216ENST00000580751 GCKRQ14397 625 aa19.62■□□□□ 0.73
SS18-216ENST00000580751 CCDC24Q8N4L8 307 aa19.62■□□□□ 0.73
SS18-216ENST00000580751 MS4A1P11836 297 aa19.61■□□□□ 0.73
SS18-216ENST00000580751 TRIM27P14373 513 aa19.61■□□□□ 0.73
SS18-216ENST00000580751 KIAA1551Q9HCM1 1747 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 ABCC4O15439 1325 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 CCT4P50991 539 aaKnown RBP19.6■□□□□ 0.73
SS18-216ENST00000580751 SLC10A5Q5PT55 438 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 NLGN2Q8NFZ4 835 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 FAM89AQ96GI7 184 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 LAMB2P55268 1798 aa19.6■□□□□ 0.73
SS18-216ENST00000580751 TNRC6CQ9HCJ0 1690 aaKnown RBP19.59■□□□□ 0.73
SS18-216ENST00000580751 CDHR2Q9BYE9 1310 aa19.59■□□□□ 0.73
SS18-216ENST00000580751 H0YIN7 160 aa19.59■□□□□ 0.73
SS18-216ENST00000580751 KLRG2A4D1S0 409 aaPredicted RBP19.58■□□□□ 0.72
SS18-216ENST00000580751 IRS4O14654 1257 aaPredicted RBP19.58■□□□□ 0.72
SS18-216ENST00000580751 PDE3AQ14432 1141 aa19.58■□□□□ 0.72
SS18-216ENST00000580751 C2CD5Q86YS7 1000 aa19.58■□□□□ 0.72
SS18-216ENST00000580751 NLRP3Q96P20 1036 aa19.58■□□□□ 0.72
SS18-216ENST00000580751 DLEC1Q9Y238 1755 aa19.57■□□□□ 0.72
SS18-216ENST00000580751 COL11A2P13942 1736 aaPredicted RBP19.57■□□□□ 0.72
SS18-216ENST00000580751 DDX60Q8IY21 1712 aaKnown RBP19.57■□□□□ 0.72
SS18-216ENST00000580751 H7C1W4 665 aa19.57■□□□□ 0.72
SS18-216ENST00000580751 DPEP1P16444 411 aa19.57■□□□□ 0.72
SS18-216ENST00000580751 RTL5Q5HYW3 569 aaPredicted RBP19.57■□□□□ 0.72
SS18-216ENST00000580751 UBE3BQ7Z3V4 1068 aa19.57■□□□□ 0.72
SS18-216ENST00000580751 FTSJ3Q8IY81 847 aaKnown RBP19.57■□□□□ 0.72
SS18-216ENST00000580751 C9orf78Q9NZ63 289 aaPredicted RBP19.57■□□□□ 0.72
SS18-216ENST00000580751 A0A0G2JLW4 131 aa19.56■□□□□ 0.72
SS18-216ENST00000580751 GRM8O00222 908 aa19.56■□□□□ 0.72
SS18-216ENST00000580751 HCLS1P14317 486 aaPredicted RBP19.56■□□□□ 0.72
SS18-216ENST00000580751 CHRNA5P30532 468 aa19.56■□□□□ 0.72
SS18-216ENST00000580751 CRY2Q49AN0 593 aa19.56■□□□□ 0.72
SS18-216ENST00000580751 INTS3Q68E01 1043 aaKnown RBP19.56■□□□□ 0.72
SS18-216ENST00000580751 SYNE4Q8N205 404 aa19.56■□□□□ 0.72
SS18-216ENST00000580751 SRGNP10124 158 aa19.55■□□□□ 0.72
SS18-216ENST00000580751 DZIP1LQ8IYY4 767 aaKnown RBP19.55■□□□□ 0.72
SS18-216ENST00000580751 CLUAP1Q96AJ1 413 aa19.55■□□□□ 0.72
SS18-216ENST00000580751 NPR1P16066 1061 aa19.54■□□□□ 0.72
SS18-216ENST00000580751 STYK1Q6J9G0 422 aa19.54■□□□□ 0.72
SS18-216ENST00000580751 RPGRQ92834 1020 aaKnown RBP19.54■□□□□ 0.72
SS18-216ENST00000580751 MASTLQ96GX5 879 aa19.54■□□□□ 0.72
SS18-216ENST00000580751 PIM2Q9P1W9 311 aa19.54■□□□□ 0.72
SS18-216ENST00000580751 PDE8AO60658 829 aa19.53■□□□□ 0.72
SS18-216ENST00000580751 KCNA3P22001 575 aa19.53■□□□□ 0.72
SS18-216ENST00000580751 CASP7P55210 303 aa19.53■□□□□ 0.72
SS18-216ENST00000580751 JARID2Q92833 1246 aaPredicted RBP19.53■□□□□ 0.72
SS18-216ENST00000580751 TNNQ9UQP3 1299 aa19.53■□□□□ 0.72
SS18-216ENST00000580751 BRCA1P38398 1863 aaKnown RBP19.53■□□□□ 0.72
SS18-216ENST00000580751 UTYO14607 1347 aa19.52■□□□□ 0.72
SS18-216ENST00000580751 SF3B3Q15393 1217 aaKnown RBP19.52■□□□□ 0.72
SS18-216ENST00000580751 C3orf67Q6ZVT6 689 aa19.52■□□□□ 0.72
SS18-216ENST00000580751 ZNF622Q969S3 477 aaKnown RBP eCLIP19.52■□□□□ 0.72
SS18-216ENST00000580751 PLA2G12BQ9BX93 195 aa19.52■□□□□ 0.72
SS18-216ENST00000580751 GOLGB1Q14789 3259 aaKnown RBP19.52■□□□□ 0.71
SS18-216ENST00000580751 CNKSR1Q969H4 720 aa19.51■□□□□ 0.71
SS18-216ENST00000580751 USP44Q9H0E7 712 aa19.51■□□□□ 0.71
SS18-216ENST00000580751 MYH3P11055 1940 aa19.51■□□□□ 0.71
SS18-216ENST00000580751 NBPF7P0C2Y1 421 aaPredicted RBP19.5■□□□□ 0.71
SS18-216ENST00000580751 ALDH1B1P30837 517 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 HOXA10P31260 410 aaPredicted RBP19.5■□□□□ 0.71
SS18-216ENST00000580751 CTSWP56202 376 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 AAMPQ13685 434 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 CCDC152Q4G0S7 254 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms