RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 BTLAQ7Z6A9 289 aa10.33□□□□□ -0.76
SMCHD1-202ENST00000577300 NGLY1Q96IV0 654 aa10.33□□□□□ -0.76
SMCHD1-202ENST00000577300 TRIM11Q96F44 468 aa10.32□□□□□ -0.76
SMCHD1-202ENST00000577300 LOC100996750A0A140TA64 210 aa10.31□□□□□ -0.76
SMCHD1-202ENST00000577300 KRTAP4-6Q9BYQ5 205 aa10.31□□□□□ -0.76
SMCHD1-202ENST00000577300 EFCC1Q9HA90 598 aa10.31□□□□□ -0.76
SMCHD1-202ENST00000577300 TGFBR3LH3BV60 316 aa10.3□□□□□ -0.76
SMCHD1-202ENST00000577300 FOXO3O43524 673 aa10.29□□□□□ -0.76
SMCHD1-202ENST00000577300 LGR5O75473 907 aa10.29□□□□□ -0.76
SMCHD1-202ENST00000577300 WEE1P30291 646 aa10.29□□□□□ -0.76
SMCHD1-202ENST00000577300 RAB44Q7Z6P3 723 aaPredicted RBP10.29□□□□□ -0.76
SMCHD1-202ENST00000577300 PRDM6Q9NQX0 595 aa10.29□□□□□ -0.76
SMCHD1-202ENST00000577300 ADH7P40394 386 aa10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 FAM200AQ8TCP9 573 aa10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 PLVAPQ9BX97 442 aa10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 DMGDHQ9UI17 866 aaKnown RBP10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 BCS1LQ9Y276 419 aa10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 STARD13Q9Y3M8 1113 aa10.28□□□□□ -0.76
SMCHD1-202ENST00000577300 BHMTQ93088 406 aa10.27□□□□□ -0.77
SMCHD1-202ENST00000577300 SPDYE3A6NKU9 549 aa10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 C1QTNF9BB2RNN3 333 aa10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 M0R082 166 aa10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 CD163Q86VB7 1156 aa10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 ZNF417Q8TAU3 575 aa10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 ZNF587Q96SQ5 575 aaPredicted RBP10.26□□□□□ -0.77
SMCHD1-202ENST00000577300 ADAM23O75077 832 aa10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 SPATA31C1P0DKV0 1188 aa10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 RFX1P22670 979 aa10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 BAG6P46379 1132 aa10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 COL9A3Q14050 684 aaPredicted RBP10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 MICALL1Q8N3F8 863 aa10.25□□□□□ -0.77
SMCHD1-202ENST00000577300 ALBP02768 609 aa10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 CHRNA4P43681 627 aa10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 MYO19Q96H55 970 aa10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 GSX2Q9BZM3 304 aa10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 QTRT2Q9H974 415 aaKnown RBP10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 NOVA2Q9UNW9 492 aaKnown RBP10.24□□□□□ -0.77
SMCHD1-202ENST00000577300 EPB42P16452 691 aa10.23□□□□□ -0.77
SMCHD1-202ENST00000577300 CDCA8Q53HL2 280 aa10.23□□□□□ -0.77
SMCHD1-202ENST00000577300 C20orf204Q6ZNR8 217 aa10.23□□□□□ -0.77
SMCHD1-202ENST00000577300 VTI1AQ96AJ9 217 aa10.23□□□□□ -0.77
SMCHD1-202ENST00000577300 KLK14Q9P0G3 267 aa10.23□□□□□ -0.77
SMCHD1-202ENST00000577300 CCINQ13939 588 aa10.22□□□□□ -0.77
SMCHD1-202ENST00000577300 ELOAQ14241 798 aaKnown RBP10.22□□□□□ -0.77
SMCHD1-202ENST00000577300 C11orf16Q9NQ32 467 aa10.22□□□□□ -0.77
SMCHD1-202ENST00000577300 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.22□□□□□ -0.77
SMCHD1-202ENST00000577300 INPP5BP32019 993 aa10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 IDH3AP50213 366 aa10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 DGKZQ13574 1117 aa10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 SWI5Q1ZZU3 235 aa10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 UBE2OQ9C0C9 1292 aaKnown RBP10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.21□□□□□ -0.77
SMCHD1-202ENST00000577300 NID1P14543 1247 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 GRNP28799 593 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 C11orf91Q3C1V1 193 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 PRRT3Q5FWE3 981 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 C8orf86Q6ZUL3 223 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 PNMA5Q96PV4 448 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 ACIN1Q9UKV3 1341 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 SLC6A14Q9UN76 642 aa10.2□□□□□ -0.78
SMCHD1-202ENST00000577300 ARSDP51689 593 aa10.19□□□□□ -0.78
SMCHD1-202ENST00000577300 K7ELQ4 463 aaPredicted RBP10.18□□□□□ -0.78
SMCHD1-202ENST00000577300 NFKB1P19838 968 aa10.18□□□□□ -0.78
SMCHD1-202ENST00000577300 SRPK2P78362 688 aaKnown RBP10.18□□□□□ -0.78
SMCHD1-202ENST00000577300 DNAJB12Q9NXW2 375 aaKnown RBP10.18□□□□□ -0.78
SMCHD1-202ENST00000577300 ZMIZ1Q9ULJ6 1067 aa10.18□□□□□ -0.78
SMCHD1-202ENST00000577300 LILRB5O75023 590 aa10.17□□□□□ -0.78
SMCHD1-202ENST00000577300 MICAL2O94851 1124 aa10.17□□□□□ -0.78
SMCHD1-202ENST00000577300 TBC1D8BQ0IIM8 1120 aa10.17□□□□□ -0.78
SMCHD1-202ENST00000577300 FKBP5Q13451 457 aaPredicted RBP10.17□□□□□ -0.78
SMCHD1-202ENST00000577300 MAP3K6O95382 1288 aa10.16□□□□□ -0.78
SMCHD1-202ENST00000577300 ZMYND15Q9H091 742 aa10.16□□□□□ -0.78
SMCHD1-202ENST00000577300 IGFLR1Q9H665 355 aa10.16□□□□□ -0.78
SMCHD1-202ENST00000577300 LRFN2Q9ULH4 789 aa10.16□□□□□ -0.78
SMCHD1-202ENST00000577300 FURINP09958 794 aa10.15□□□□□ -0.78
SMCHD1-202ENST00000577300 FAM69CQ0P6D2 419 aa10.15□□□□□ -0.78
SMCHD1-202ENST00000577300 TRIM28Q13263 835 aaKnown RBP10.15□□□□□ -0.78
SMCHD1-202ENST00000577300 PCSK7Q16549 785 aa10.15□□□□□ -0.78
SMCHD1-202ENST00000577300 ATG7O95352 703 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 APBA3O96018 575 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 GATA4P43694 442 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 OCLNQ16625 522 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 IFT43Q96FT9 208 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 PRIMPOLQ96LW4 560 aa10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 JPH1Q9HDC5 661 aaPredicted RBP10.14□□□□□ -0.79
SMCHD1-202ENST00000577300 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 COX20Q5RI15 118 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 PSAPL1Q6NUJ1 521 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 STK32AQ8WU08 396 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 NACC1Q96RE7 527 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 ZFATQ9P243 1243 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 NAGPAQ9UK23 515 aa10.13□□□□□ -0.79
SMCHD1-202ENST00000577300 FAM229AH3BQW9 127 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 OPLAHO14841 1288 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 PRMT3O60678 531 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 EGFRP00533 1210 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 TRAPPC3LQ5T215 181 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 NUDT8Q8WV74 236 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 COL26A1Q96A83 441 aa10.12□□□□□ -0.79
SMCHD1-202ENST00000577300 TREML1Q86YW5 311 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms