RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TNNI2P48788 182 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 CCDC144BQ3MJ40 725 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 ZBTB33Q86T24 672 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 DZIP3Q86Y13 1208 aaKnown RBP8.21□□□□□ -1.1
VPS53-219ENST00000576019 ARMC2Q8NEN0 867 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 TMC1Q8TDI8 760 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 GPKOWQ92917 476 aaPredicted RBP eCLIP8.21□□□□□ -1.1
VPS53-219ENST00000576019 RNF34Q969K3 372 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 TGIF2Q9GZN2 237 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 ACBD3Q9H3P7 528 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 VTI1BQ9UEU0 232 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 PNPLA6Q8IY17 1366 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 MIA2Q96PC5 1412 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 KCNQ2O43526 872 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 NDUFB5O43674 189 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 CCNYL3P0C7X3 344 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 KCNA6P17658 529 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 BRICD5Q6PL45 260 aa8.2□□□□□ -1.1
VPS53-219ENST00000576019 FAM9AQ8IZU1 332 aaPredicted RBP8.2□□□□□ -1.1
VPS53-219ENST00000576019 SORBS3O60504 671 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 PRPF40AO75400 957 aaKnown RBP8.19□□□□□ -1.1
VPS53-219ENST00000576019 FAM13AO94988 1023 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 ADAMTS2O95450 1211 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 DNAJA1P31689 397 aaKnown RBP8.19□□□□□ -1.1
VPS53-219ENST00000576019 JMYQ8N9B5 988 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 PMFBP1Q8TBY8 1022 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 CARD14Q9BXL6 1004 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS53-219ENST00000576019 A2MP01023 1474 aa8.19□□□□□ -1.1
VPS53-219ENST00000576019 FAM83GA6ND36 823 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 ZNF76P36508 570 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 APLP1P51693 650 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 PSMD2Q13200 908 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 TMC4Q7Z404 712 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 SLC43A3Q8NBI5 491 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 SETDB2Q96T68 719 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 PIF1Q9H611 641 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 METTL5Q9NRN9 209 aaKnown RBP8.18□□□□□ -1.1
VPS53-219ENST00000576019 NCOA2Q15596 1464 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 GLI3P10071 1580 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 MROH1Q8NDA8 1641 aa8.18□□□□□ -1.1
VPS53-219ENST00000576019 RGPD1P0DJD0 1748 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 GOLGB1Q14789 3259 aaKnown RBP8.17□□□□□ -1.1
VPS53-219ENST00000576019 TLDC2A0PJX2 215 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 NPR3P17342 541 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 NUDT12Q9BQG2 462 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 NLRP2Q9NX02 1062 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 SAMD9Q5K651 1589 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 NRKQ7Z2Y5 1582 aa8.17□□□□□ -1.1
VPS53-219ENST00000576019 MAGEB6P1A0A0J9YX57 407 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 BHMG1C9JSJ3 638 aaPredicted RBP8.16□□□□□ -1.1
VPS53-219ENST00000576019 DAB2P98082 770 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 EHHADHQ08426 723 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 PTCH1Q13635 1447 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 DSC3Q14574 896 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 SDE2Q6IQ49 451 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS53-219ENST00000576019 RNF166Q96A37 237 aaPredicted RBP8.16□□□□□ -1.1
VPS53-219ENST00000576019 PRKD2Q9BZL6 878 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 EVA1BQ9NVM1 165 aa8.16□□□□□ -1.1
VPS53-219ENST00000576019 KIAA1210Q9ULL0 1709 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 SLIT1O75093 1534 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 SBNO2Q9Y2G9 1366 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 LTKP29376 864 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 PLCB3Q01970 1234 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 GNL2Q13823 731 aaKnown RBP8.15□□□□□ -1.1
VPS53-219ENST00000576019 GGT6Q6P531 493 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 SH3BP5LQ7L8J4 393 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 COL26A1Q96A83 441 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 LRRC59Q96AG4 307 aaKnown RBP8.15□□□□□ -1.1
VPS53-219ENST00000576019 THAP11Q96EK4 314 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 CCDC87Q9NVE4 849 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.15□□□□□ -1.1
VPS53-219ENST00000576019 SALL2Q9Y467 1007 aaPredicted RBP8.15□□□□□ -1.1
VPS53-219ENST00000576019 PCDHB11Q9Y5F2 797 aa8.15□□□□□ -1.1
VPS53-219ENST00000576019 ARHGAP5Q13017 1502 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 GPR182O15218 404 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 MARCH6O60337 910 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 FGD1P98174 961 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 PDE3BQ13370 1112 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 AAMPQ13685 434 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 BRINP3Q76B58 766 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 NOL8Q76FK4 1167 aaKnown RBP8.14□□□□□ -1.11
VPS53-219ENST00000576019 ZSWIM4Q9H7M6 989 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.14□□□□□ -1.11
VPS53-219ENST00000576019 TNS1Q9HBL0 1735 aaKnown RBP8.14□□□□□ -1.11
VPS53-219ENST00000576019 MYOM1P52179 1685 aa8.14□□□□□ -1.11
VPS53-219ENST00000576019 UBR1Q8IWV7 1749 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 ITGAEP38570 1179 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 ATP2B2Q01814 1243 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 USP4Q13107 963 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 SCUBE3Q8IX30 993 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 MICAL1Q8TDZ2 1067 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 ARMC5Q96C12 935 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 GPATCH3Q96I76 525 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 TBX22Q9Y458 520 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 ASXL1Q8IXJ9 1541 aa8.13□□□□□ -1.11
VPS53-219ENST00000576019 RREB1Q92766 1687 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 M0R2N6 131 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 FOXO3O43524 673 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 234.3 ms