RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 MYD88Q99836 296 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 PIM2Q9P1W9 311 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 TRMT112Q9UI30 125 aaKnown RBP12.17□□□□□ -0.46
CCDC40-214ENST00000575431 ATP5J2-PTCD1G3V325 749 aa12.16□□□□□ -0.46
CCDC40-214ENST00000575431 DPEP1P16444 411 aa12.16□□□□□ -0.46
CCDC40-214ENST00000575431 RARSP54136 660 aaKnown RBP12.16□□□□□ -0.46
CCDC40-214ENST00000575431 LINS1Q8NG48 757 aa12.16□□□□□ -0.46
CCDC40-214ENST00000575431 NLRP3Q96P20 1036 aa12.16□□□□□ -0.46
CCDC40-214ENST00000575431 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
CCDC40-214ENST00000575431 KIF16BQ96L93 1317 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 A0A0G2JLW4 131 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 KLRG2A4D1S0 409 aaPredicted RBP12.15□□□□□ -0.46
CCDC40-214ENST00000575431 IPO8O15397 1037 aaKnown RBP12.15□□□□□ -0.46
CCDC40-214ENST00000575431 ERFEQ4G0M1 354 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 NUTM1Q86Y26 1132 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 C2CD5Q86YS7 1000 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 ZBTB38Q8NAP3 1195 aaPredicted RBP12.15□□□□□ -0.46
CCDC40-214ENST00000575431 ARHGAP45Q92619 1136 aa12.15□□□□□ -0.46
CCDC40-214ENST00000575431 ANKRD31Q8N7Z5 1873 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 KIAA1551Q9HCM1 1747 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 NEURL1BA8MQ27 555 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 GRIN3BO60391 1043 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 PCCAP05165 728 aaPredicted RBP12.14□□□□□ -0.47
CCDC40-214ENST00000575431 SRGNP10124 158 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 GPR162Q16538 588 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 STYK1Q6J9G0 422 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 CNKSR1Q969H4 720 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 MASTLQ96GX5 879 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 API5Q9BZZ5 524 aaKnown RBP12.14□□□□□ -0.47
CCDC40-214ENST00000575431 DLEC1Q9Y238 1755 aa12.14□□□□□ -0.47
CCDC40-214ENST00000575431 N4BP2Q86UW6 1770 aaPredicted RBP12.13□□□□□ -0.47
CCDC40-214ENST00000575431 ALDH1L1O75891 902 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 IGKV5-2P06315 115 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 NPR1P16066 1061 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 KCNA3P22001 575 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 CHRNA5P30532 468 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 ALDH1B1P30837 517 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 CRY2Q49AN0 593 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 DALRD3Q5D0E6 543 aaKnown RBP12.13□□□□□ -0.47
CCDC40-214ENST00000575431 TTLL6Q8N841 843 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 BCL2L13Q9BXK5 485 aa12.13□□□□□ -0.47
CCDC40-214ENST00000575431 CDHR2Q9BYE9 1310 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 BRCA1P38398 1863 aaKnown RBP12.12□□□□□ -0.47
CCDC40-214ENST00000575431 F6X3S4 739 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 HOXA10P31260 410 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-214ENST00000575431 GCKRQ14397 625 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 BEND3Q5T5X7 828 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 CCDC24Q8N4L8 307 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 ZNF622Q969S3 477 aaKnown RBP eCLIP12.12□□□□□ -0.47
CCDC40-214ENST00000575431 FAM89AQ96GI7 184 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 SRCIN1Q9C0H9 1055 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 ABCC12Q96J65 1359 aa12.12□□□□□ -0.47
CCDC40-214ENST00000575431 H7C1W4 665 aa12.11□□□□□ -0.47
CCDC40-214ENST00000575431 IRS4O14654 1257 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-214ENST00000575431 CWF19L2Q2TBE0 894 aaKnown RBP12.11□□□□□ -0.47
CCDC40-214ENST00000575431 SLC4A10Q6U841 1118 aa12.11□□□□□ -0.47
CCDC40-214ENST00000575431 PELP1Q8IZL8 1130 aaKnown RBP12.11□□□□□ -0.47
CCDC40-214ENST00000575431 RPGRQ92834 1020 aaKnown RBP12.11□□□□□ -0.47
CCDC40-214ENST00000575431 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
CCDC40-214ENST00000575431 NOB1Q9ULX3 412 aaKnown RBP12.11□□□□□ -0.47
CCDC40-214ENST00000575431 BCS1LQ9Y276 419 aa12.11□□□□□ -0.47
CCDC40-214ENST00000575431 PDE8AO60658 829 aa12.1□□□□□ -0.47
CCDC40-214ENST00000575431 CCT4P50991 539 aaKnown RBP12.1□□□□□ -0.47
CCDC40-214ENST00000575431 SF3B3Q15393 1217 aaKnown RBP12.1□□□□□ -0.47
CCDC40-214ENST00000575431 SOGA3Q5TF21 947 aa12.1□□□□□ -0.47
CCDC40-214ENST00000575431 RBM17Q96I25 401 aaKnown RBP12.1□□□□□ -0.47
CCDC40-214ENST00000575431 HDAC5Q9UQL6 1122 aa12.1□□□□□ -0.47
CCDC40-214ENST00000575431 LAMB2P55268 1798 aa12.1□□□□□ -0.47
CCDC40-214ENST00000575431 ARFGEF1Q9Y6D6 1849 aa12.09□□□□□ -0.47
CCDC40-214ENST00000575431 COL11A2P13942 1736 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-214ENST00000575431 BCAR3O75815 825 aa12.09□□□□□ -0.47
CCDC40-214ENST00000575431 HCLS1P14317 486 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-214ENST00000575431 ZKSCAN2Q63HK3 967 aa12.09□□□□□ -0.47
CCDC40-214ENST00000575431 ATF7IPQ6VMQ6 1270 aa12.09□□□□□ -0.47
CCDC40-214ENST00000575431 YTHDC1Q96MU7 727 aaKnown RBP12.09□□□□□ -0.47
CCDC40-214ENST00000575431 C9orf78Q9NZ63 289 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-214ENST00000575431 TNRC6CQ9HCJ0 1690 aaKnown RBP12.09□□□□□ -0.47
CCDC40-214ENST00000575431 DDX60Q8IY21 1712 aaKnown RBP12.08□□□□□ -0.47
CCDC40-214ENST00000575431 GRM8O00222 908 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 BBOX1O75936 387 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 MS4A1P11836 297 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 YBX3P16989 372 aaKnown RBP eCLIP12.08□□□□□ -0.48
CCDC40-214ENST00000575431 GRIPAP1Q4V328 841 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 RTL5Q5HYW3 569 aaPredicted RBP12.08□□□□□ -0.48
CCDC40-214ENST00000575431 CC2D2BQ6DHV5 1058 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 DDX46Q7L014 1031 aaKnown RBP12.08□□□□□ -0.48
CCDC40-214ENST00000575431 UBE3BQ7Z3V4 1068 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 TMC4Q7Z404 712 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 PLA2G12BQ9BX93 195 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 TMX4Q9H1E5 349 aaPredicted RBP12.08□□□□□ -0.48
CCDC40-214ENST00000575431 RCAN3Q9UKA8 241 aa12.08□□□□□ -0.48
CCDC40-214ENST00000575431 CCDC152Q4G0S7 254 aa12.07□□□□□ -0.48
CCDC40-214ENST00000575431 PRPF40BQ6NWY9 871 aaKnown RBP12.07□□□□□ -0.48
CCDC40-214ENST00000575431 SYNE4Q8N205 404 aa12.07□□□□□ -0.48
CCDC40-214ENST00000575431 FRAT1Q92837 279 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-214ENST00000575431 CASP7P55210 303 aa12.06□□□□□ -0.48
CCDC40-214ENST00000575431 INTS3Q68E01 1043 aaKnown RBP12.06□□□□□ -0.48
CCDC40-214ENST00000575431 UTYO14607 1347 aa12.06□□□□□ -0.48
CCDC40-214ENST00000575431 ABCC4O15439 1325 aa12.06□□□□□ -0.48
CCDC40-214ENST00000575431 TRIM27P14373 513 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms