RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ERBB3P21860 1342 aa11.37□□□□□ -0.59
CCDC40-212ENST00000574799 IRX3P78415 501 aaPredicted RBP11.37□□□□□ -0.59
CCDC40-212ENST00000574799 NCBP1Q09161 790 aaKnown RBP11.37□□□□□ -0.59
CCDC40-212ENST00000574799 KRT28Q7Z3Y7 464 aa11.37□□□□□ -0.59
CCDC40-212ENST00000574799 CKAP2LQ8IYA6 745 aa11.37□□□□□ -0.59
CCDC40-212ENST00000574799 DCTPP1Q9H773 170 aa11.37□□□□□ -0.59
CCDC40-212ENST00000574799 SALL3Q9BXA9 1300 aa11.37□□□□□ -0.59
CCDC40-212ENST00000574799 NOL10Q9BSC4 688 aaKnown RBP11.37□□□□□ -0.59
CCDC40-212ENST00000574799 TRMT1Q9NXH9 659 aaKnown RBP11.37□□□□□ -0.59
CCDC40-212ENST00000574799 PRAMEF22A3QJZ6 481 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 POLR3GO15318 223 aaPredicted RBP11.36□□□□□ -0.59
CCDC40-212ENST00000574799 DTNBO60941 627 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 GORABQ5T7V8 394 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 NUP188Q5SRE5 1749 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 TNS3Q68CZ2 1445 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 BECN2A8MW95 431 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 EIF4A1P60842 406 aaKnown RBP11.36□□□□□ -0.59
CCDC40-212ENST00000574799 LRMPQ12912 555 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 ZRSR1Q15695 479 aaKnown RBP11.36□□□□□ -0.59
CCDC40-212ENST00000574799 CEP135Q66GS9 1140 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 FILIP1Q7Z7B0 1213 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 PROSER2Q86WR7 435 aaPredicted RBP11.36□□□□□ -0.59
CCDC40-212ENST00000574799 ANKRD44Q8N8A2 993 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 SPTLC3Q9NUV7 552 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 PAXBP1Q9Y5B6 917 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 NRDCO43847 1150 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 PTPN14Q15678 1187 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 KCNH5Q8NCM2 988 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 BICD2Q8TD16 824 aa11.36□□□□□ -0.59
CCDC40-212ENST00000574799 ARFGEF2Q9Y6D5 1785 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 SRCIN1Q9C0H9 1055 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 PHAXQ9H814 394 aaKnown RBP11.35□□□□□ -0.59
CCDC40-212ENST00000574799 ZNF397Q8NF99 534 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-212ENST00000574799 NUP62CLQ9H1M0 184 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 TNMDQ9H2S6 317 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-212ENST00000574799 MAP3K11Q16584 847 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 ANKRD24Q8TF21 1146 aa11.35□□□□□ -0.59
CCDC40-212ENST00000574799 ADCY9O60503 1353 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 TAF7Q15545 349 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-212ENST00000574799 TERF2Q15554 542 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 LUZP1Q86V48 1076 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 ANKRD7Q92527 254 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 GTF3C6Q969F1 213 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 FBXW7Q969H0 707 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 BABAM1Q9NWV8 329 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 FERMT3Q86UX7 667 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 HOMER1Q86YM7 354 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 CLIP2Q9UDT6 1046 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 CTNNA3Q9UI47 895 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 WNK3Q9BYP7 1800 aa11.34□□□□□ -0.59
CCDC40-212ENST00000574799 STX6O43752 255 aa11.33□□□□□ -0.59
CCDC40-212ENST00000574799 GPS2Q13227 327 aa11.33□□□□□ -0.59
CCDC40-212ENST00000574799 TSPYL1Q9H0U9 437 aa11.33□□□□□ -0.59
CCDC40-212ENST00000574799 EXOC6BQ9Y2D4 811 aa11.33□□□□□ -0.59
CCDC40-212ENST00000574799 TJP1Q07157 1748 aa11.33□□□□□ -0.6
CCDC40-212ENST00000574799 DDX41Q9UJV9 622 aaKnown RBP11.33□□□□□ -0.6
CCDC40-212ENST00000574799 FLIIQ13045 1269 aa11.33□□□□□ -0.6
CCDC40-212ENST00000574799 C14orf37Q86TY3 774 aa11.33□□□□□ -0.6
CCDC40-212ENST00000574799 FAM200AQ8TCP9 573 aa11.33□□□□□ -0.6
CCDC40-212ENST00000574799 ZSCAN22P10073 491 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 RPAP2Q8IXW5 612 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 CABLES1Q8TDN4 633 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 NECTIN2Q92692 538 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 DNM1Q05193 864 aaKnown RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 GNL2Q13823 731 aaKnown RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 ELF2Q15723 593 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 MPRIPQ6WCQ1 1025 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 AFDNP55196 1824 aaKnown RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 COL16A1Q07092 1604 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 PNMA6EA0A0J9YXQ4 647 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 AKAP4Q5JQC9 854 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 LRP10Q7Z4F1 713 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 KIF18AQ8NI77 898 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 INTS4Q96HW7 963 aaKnown RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 ARGLU1Q9NWB6 273 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-212ENST00000574799 CPDO75976 1380 aa11.32□□□□□ -0.6
CCDC40-212ENST00000574799 RNMTO43148 476 aaKnown RBP11.31□□□□□ -0.6
CCDC40-212ENST00000574799 PDIA6Q15084 440 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 USP44Q9H0E7 712 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 ZNF215Q9UL58 517 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-212ENST00000574799 SPATA31A3Q5VYP0 1347 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 HAP1P54257 671 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-212ENST00000574799 PROSER3Q2NL68 480 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 KCNF1Q9H3M0 494 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 TMX1Q9H3N1 280 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 MAP4K4O95819 1239 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-212ENST00000574799 SLFN14P0C7P3 912 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 BMS1Q14692 1282 aaKnown RBP11.31□□□□□ -0.6
CCDC40-212ENST00000574799 BRINP3Q76B58 766 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 CCDC83Q8IWF9 413 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 MNS1Q8NEH6 495 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 ZBTB9Q96C00 473 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 PALD1Q9ULE6 856 aa11.31□□□□□ -0.6
CCDC40-212ENST00000574799 KRT85P78386 507 aa11.3□□□□□ -0.6
CCDC40-212ENST00000574799 ANO6Q4KMQ2 910 aa11.3□□□□□ -0.6
CCDC40-212ENST00000574799 ESYT1Q9BSJ8 1104 aa11.3□□□□□ -0.6
CCDC40-212ENST00000574799 NRBP1Q9UHY1 535 aa11.3□□□□□ -0.6
CCDC40-212ENST00000574799 KCPQ6ZWJ8 1503 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms