RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 PARP3Q9Y6F1 533 aa2.99□□□□□ -1.93
CHD3-217ENST00000574022 hCG_2014768A0A024R1R8 64 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 K7ELQ4 463 aaPredicted RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 RAB11FIP3O75154 756 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 TNFRSF21O75509 655 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 MICAL2O94851 1124 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 CD2BP2O95400 341 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 ADH1CP00326 375 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 SSBP05455 408 aaKnown RBP eCLIP2.98□□□□□ -1.93
CHD3-217ENST00000574022 USP17L7P0C7H9 530 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 XRCC5P13010 732 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 GTF2E1P29083 439 aaPredicted RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 PTPN5P54829 565 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 ANAPC15P60006 121 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 CLN3Q13286 438 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 RNF187Q5TA31 235 aaPredicted RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 RC3H1Q5TC82 1133 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 NBPF6Q5VWK0 638 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 USPL1Q5W0Q7 1092 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 PI16Q6UXB8 463 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 ERMP1Q7Z2K6 904 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 JAZF1Q86VZ6 243 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 MPNDQ8N594 471 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 ZCRB1Q8TBF4 217 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 KCNB2Q92953 911 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 GPATCH3Q96I76 525 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 SEC16BQ96JE7 1060 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 NBPF4Q96M43 638 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 NLRP3Q96P20 1036 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 NIFKQ9BYG3 293 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 ZFYVE28Q9HCC9 887 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 FAM8A1Q9UBU6 413 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 DMGDHQ9UI17 866 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 FNDC3AQ9Y2H6 1198 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 HRH3Q9Y5N1 445 aa2.98□□□□□ -1.93
CHD3-217ENST00000574022 MRPL42Q9Y6G3 142 aaKnown RBP2.98□□□□□ -1.93
CHD3-217ENST00000574022 MEN1O00255 615 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 GADD45BO75293 160 aaPredicted RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 IRS1P35568 1242 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 NFX1Q12986 1120 aaKnown RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 HIF1AQ16665 826 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 TMEM214Q6NUQ4 689 aaKnown RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 NXPE4Q6UWF7 544 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 XKR5Q6UX68 686 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 ZNF438Q7Z4V0 828 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 PPARGC1BQ86YN6 1023 aaKnown RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 RELL1Q8IUW5 271 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 MICAL1Q8TDZ2 1067 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 MKL1Q969V6 931 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 ZSCAN10Q96SZ4 725 aaPredicted RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 SPON2Q9BUD6 331 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 RSRP1Q9BUV0 290 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 FHDC1Q9C0D6 1143 aaPredicted RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 SRCIN1Q9C0H9 1055 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 METTL14Q9HCE5 456 aaKnown RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 COPRSQ9NQ92 184 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 PPP4R2Q9NY27 417 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 SIRPGQ9P1W8 387 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 FOXD3Q9UJU5 478 aaPredicted RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 BCS1LQ9Y276 419 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 NOP58Q9Y2X3 529 aaKnown RBP2.97□□□□□ -1.93
CHD3-217ENST00000574022 TLL2Q9Y6L7 1015 aa2.97□□□□□ -1.93
CHD3-217ENST00000574022 RNF223E7ERA6 249 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 U2SURPO15042 1029 aaKnown RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 SIAH2O43255 324 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 PHACTR2O75167 634 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 ADH1AP07327 375 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 NR3C2P08235 984 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 GGCXP38435 758 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 TXLNAP40222 546 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 PTGIRP43119 386 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 RPIAP49247 311 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 SERINC3Q13530 473 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 PLA2G2CQ5R387 149 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 PDE12Q6L8Q7 609 aaKnown RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 KIAA0825Q8IV33 1275 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 ZNF295-AS1Q8N0V1 137 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 ANKLE1Q8NAG6 615 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 KDF1Q8NAX2 398 aaPredicted RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 RHPN1Q8TCX5 695 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 RASGRP4Q8TDF6 673 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 SNX29Q8TEQ0 813 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 AIDAQ96BJ3 306 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 FAM163AQ96GL9 167 aaPredicted RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 SRPK1Q96SB4 655 aaKnown RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 NOC4LQ9BVI4 516 aaKnown RBP2.96□□□□□ -1.94
CHD3-217ENST00000574022 TRIM55Q9BYV6 548 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 BCO2Q9BYV7 579 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 BRINP2Q9C0B6 783 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 ZNF408Q9H9D4 720 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 ELP3Q9H9T3 547 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 KBTBD4Q9NVX7 518 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 EFR3BQ9Y2G0 817 aa2.96□□□□□ -1.94
CHD3-217ENST00000574022 MINDY4BA8MYZ0 360 aa2.95□□□□□ -1.94
CHD3-217ENST00000574022 UBAP1LF5GYI3 381 aa2.95□□□□□ -1.94
CHD3-217ENST00000574022 TGFBR3LH3BV60 316 aa2.95□□□□□ -1.94
CHD3-217ENST00000574022 ENPP3O14638 875 aa2.95□□□□□ -1.94
CHD3-217ENST00000574022 PPP1R12AO14974 1030 aaPredicted RBP2.95□□□□□ -1.94
CHD3-217ENST00000574022 POLR3DP05423 398 aaPredicted RBP2.95□□□□□ -1.94
CHD3-217ENST00000574022 GSTT1P30711 240 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms