RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 HSPA6P17066 643 aa22.69■■□□□ 1.22
SMG6-214ENST00000573827 GNAI1P63096 354 aa22.69■■□□□ 1.22
SMG6-214ENST00000573827 AIMP1Q12904 312 aaKnown RBP22.69■■□□□ 1.22
SMG6-214ENST00000573827 SLC51AQ86UW1 340 aa22.69■■□□□ 1.22
SMG6-214ENST00000573827 NLRP10Q86W26 655 aa22.69■■□□□ 1.22
SMG6-214ENST00000573827 RRAGCQ9HB90 399 aa22.69■■□□□ 1.22
SMG6-214ENST00000573827 POTECB2RU33 542 aa22.68■■□□□ 1.22
SMG6-214ENST00000573827 TCIRG1Q13488 830 aa22.68■■□□□ 1.22
SMG6-214ENST00000573827 CCDC93Q567U6 631 aa22.68■■□□□ 1.22
SMG6-214ENST00000573827 DBF4Q9UBU7 674 aaPredicted RBP22.68■■□□□ 1.22
SMG6-214ENST00000573827 ALDH1B1P30837 517 aa22.67■■□□□ 1.22
SMG6-214ENST00000573827 CCDC27Q2M243 656 aa22.67■■□□□ 1.22
SMG6-214ENST00000573827 PPP1R42Q7Z4L9 355 aa22.67■■□□□ 1.22
SMG6-214ENST00000573827 C8orf58Q8NAV2 365 aa22.67■■□□□ 1.22
SMG6-214ENST00000573827 RBM46Q8TBY0 533 aaKnown RBP22.67■■□□□ 1.22
SMG6-214ENST00000573827 UTP14AQ9BVJ6 771 aaKnown RBP22.67■■□□□ 1.22
SMG6-214ENST00000573827 RNF123Q5XPI4 1314 aa22.66■■□□□ 1.22
SMG6-214ENST00000573827 CALD1Q05682 793 aaKnown RBP22.66■■□□□ 1.22
SMG6-214ENST00000573827 HSP90AB3PQ58FF7 597 aa22.66■■□□□ 1.22
SMG6-214ENST00000573827 SYNE4Q8N205 404 aa22.66■■□□□ 1.22
SMG6-214ENST00000573827 FKBP4Q02790 459 aaKnown RBP eCLIP22.65■■□□□ 1.22
SMG6-214ENST00000573827 NCBP3Q53F19 620 aaKnown RBP22.65■■□□□ 1.22
SMG6-214ENST00000573827 PLBD2Q8NHP8 589 aa22.65■■□□□ 1.22
SMG6-214ENST00000573827 CRAMP1Q96RY5 1269 aa22.65■■□□□ 1.22
SMG6-214ENST00000573827 ISCA1Q9BUE6 129 aa22.65■■□□□ 1.22
SMG6-214ENST00000573827 WDR90Q96KV7 1748 aa22.65■■□□□ 1.22
SMG6-214ENST00000573827 WWC1Q8IX03 1113 aa22.64■■□□□ 1.21
SMG6-214ENST00000573827 MRS2Q9HD23 443 aa22.64■■□□□ 1.21
SMG6-214ENST00000573827 HYPKQ9NX55 129 aa22.64■■□□□ 1.21
SMG6-214ENST00000573827 ANKRD13DQ6ZTN6 518 aa22.63■■□□□ 1.21
SMG6-214ENST00000573827 RTKN2Q8IZC4 609 aa22.63■■□□□ 1.21
SMG6-214ENST00000573827 ELL2O00472 640 aaPredicted RBP22.62■■□□□ 1.21
SMG6-214ENST00000573827 ANP32CO43423 234 aa22.62■■□□□ 1.21
SMG6-214ENST00000573827 TSPYL6Q8N831 410 aa22.62■■□□□ 1.21
SMG6-214ENST00000573827 ZNF277Q9NRM2 450 aaPredicted RBP22.62■■□□□ 1.21
SMG6-214ENST00000573827 PCNTO95613 3336 aa22.62■■□□□ 1.21
SMG6-214ENST00000573827 COL4A5P29400 1685 aa22.62■■□□□ 1.21
SMG6-214ENST00000573827 LAMB2P55268 1798 aa22.61■■□□□ 1.21
SMG6-214ENST00000573827 RPGRQ92834 1020 aaKnown RBP22.61■■□□□ 1.21
SMG6-214ENST00000573827 NLRP3Q96P20 1036 aa22.61■■□□□ 1.21
SMG6-214ENST00000573827 PSMD1Q99460 953 aa22.61■■□□□ 1.21
SMG6-214ENST00000573827 HCLS1P14317 486 aaPredicted RBP22.6■■□□□ 1.21
SMG6-214ENST00000573827 VEGFAP15692 232 aaPredicted RBP22.6■■□□□ 1.21
SMG6-214ENST00000573827 TRIM28Q13263 835 aaKnown RBP22.6■■□□□ 1.21
SMG6-214ENST00000573827 TSR2Q969E8 191 aaKnown RBP22.6■■□□□ 1.21
SMG6-214ENST00000573827 PHAXQ9H814 394 aaKnown RBP22.6■■□□□ 1.21
SMG6-214ENST00000573827 CC2D2BQ6DHV5 1058 aa22.59■■□□□ 1.21
SMG6-214ENST00000573827 RBM17Q96I25 401 aaKnown RBP22.59■■□□□ 1.21
SMG6-214ENST00000573827 TRMT112Q9UI30 125 aaKnown RBP22.59■■□□□ 1.21
SMG6-214ENST00000573827 ABCC4O15439 1325 aa22.58■■□□□ 1.21
SMG6-214ENST00000573827 SH3TC1Q8TE82 1336 aa22.58■■□□□ 1.21
SMG6-214ENST00000573827 DDNO94850 711 aaPredicted RBP22.58■■□□□ 1.21
SMG6-214ENST00000573827 FSTL1Q12841 308 aa22.58■■□□□ 1.21
SMG6-214ENST00000573827 IL16Q14005 1332 aa22.57■■□□□ 1.2
SMG6-214ENST00000573827 ZNF541Q9H0D2 1346 aa22.57■■□□□ 1.2
SMG6-214ENST00000573827 DDX60Q8IY21 1712 aaKnown RBP22.57■■□□□ 1.2
SMG6-214ENST00000573827 ATP5J2-PTCD1G3V325 749 aa22.57■■□□□ 1.2
SMG6-214ENST00000573827 DPY19L2Q6NUT2 758 aa22.57■■□□□ 1.2
SMG6-214ENST00000573827 ZNF428Q96B54 188 aa22.57■■□□□ 1.2
SMG6-214ENST00000573827 FZD9O00144 591 aa22.56■■□□□ 1.2
SMG6-214ENST00000573827 PPEF1O14829 653 aaPredicted RBP22.56■■□□□ 1.2
SMG6-214ENST00000573827 IARSP41252 1262 aaKnown RBP22.56■■□□□ 1.2
SMG6-214ENST00000573827 C16orf71Q8IYS4 520 aaPredicted RBP22.56■■□□□ 1.2
SMG6-214ENST00000573827 L3MBTL3Q96JM7 780 aaPredicted RBP22.56■■□□□ 1.2
SMG6-214ENST00000573827 APLP1P51693 650 aa22.55■■□□□ 1.2
SMG6-214ENST00000573827 DNAJC5GQ8N7S2 189 aa22.55■■□□□ 1.2
SMG6-214ENST00000573827 ATP6V0A2Q9Y487 856 aa22.55■■□□□ 1.2
SMG6-214ENST00000573827 COL4A1P02462 1669 aa22.55■■□□□ 1.2
SMG6-214ENST00000573827 FAM89AQ96GI7 184 aa22.54■■□□□ 1.2
SMG6-214ENST00000573827 GRIPAP1Q4V328 841 aa22.53■■□□□ 1.2
SMG6-214ENST00000573827 SMC1BQ8NDV3 1235 aa22.53■■□□□ 1.2
SMG6-214ENST00000573827 TAF1P21675 1872 aa22.52■■□□□ 1.2
SMG6-214ENST00000573827 SF3B3Q15393 1217 aaKnown RBP22.52■■□□□ 1.2
SMG6-214ENST00000573827 CCDC30Q5VVM6 783 aa22.52■■□□□ 1.2
SMG6-214ENST00000573827 TCERG1O14776 1098 aaKnown RBP22.51■■□□□ 1.19
SMG6-214ENST00000573827 BBOX1O75936 387 aa22.51■■□□□ 1.19
SMG6-214ENST00000573827 GOLGA2Q08379 1002 aa22.51■■□□□ 1.19
SMG6-214ENST00000573827 RTFDC1Q9BY42 306 aaPredicted RBP22.51■■□□□ 1.19
SMG6-214ENST00000573827 FANCIQ9NVI1 1328 aa22.51■■□□□ 1.19
SMG6-214ENST00000573827 POTEIP0CG38 1075 aa22.5■■□□□ 1.19
SMG6-214ENST00000573827 POTEJP0CG39 1038 aa22.5■■□□□ 1.19
SMG6-214ENST00000573827 GRAPQ13588 217 aa22.5■■□□□ 1.19
SMG6-214ENST00000573827 RIC3Q7Z5B4 369 aa22.5■■□□□ 1.19
SMG6-214ENST00000573827 GRAPLQ8TC17 118 aaPredicted RBP22.5■■□□□ 1.19
SMG6-214ENST00000573827 SPINK5Q9NQ38 1064 aaPredicted RBP22.5■■□□□ 1.19
SMG6-214ENST00000573827 LRRC37AA6NMS7 1700 aa22.49■■□□□ 1.19
SMG6-214ENST00000573827 WDR63Q8IWG1 891 aa22.49■■□□□ 1.19
SMG6-214ENST00000573827 SP8Q8IXZ3 490 aa22.49■■□□□ 1.19
SMG6-214ENST00000573827 METTL22Q9BUU2 404 aaPredicted RBP22.49■■□□□ 1.19
SMG6-214ENST00000573827 SCN4AP35499 1836 aa22.49■■□□□ 1.19
SMG6-214ENST00000573827 DUOX1Q9NRD9 1551 aa22.49■■□□□ 1.19
SMG6-214ENST00000573827 HTRA3P83110 453 aa22.48■■□□□ 1.19
SMG6-214ENST00000573827 TWISTNBQ3B726 338 aaPredicted RBP22.48■■□□□ 1.19
SMG6-214ENST00000573827 DDX46Q7L014 1031 aaKnown RBP22.48■■□□□ 1.19
SMG6-214ENST00000573827 G2E3Q7L622 706 aa22.48■■□□□ 1.19
SMG6-214ENST00000573827 MYD88Q99836 296 aa22.48■■□□□ 1.19
SMG6-214ENST00000573827 IRS4O14654 1257 aaPredicted RBP22.47■■□□□ 1.19
SMG6-214ENST00000573827 ZBTB38Q8NAP3 1195 aaPredicted RBP22.47■■□□□ 1.19
SMG6-214ENST00000573827 CCDC191Q8NCU4 936 aa22.47■■□□□ 1.19
SMG6-214ENST00000573827 CHMP4AQ9BY43 222 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms