RNA–Protein interactions for RNA: ENST00000571886.1

GTF3C1-213, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 721 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-213ENST00000571886 MIER1Q8N108 512 aa13.23□□□□□ -0.29
GTF3C1-213ENST00000571886 NYXQ9GZU5 481 aa13.23□□□□□ -0.29
GTF3C1-213ENST00000571886 PDZRN3Q9UPQ7 1066 aa13.23□□□□□ -0.29
GTF3C1-213ENST00000571886 ARFGEF2Q9Y6D5 1785 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 NFKBIEO00221 500 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 VAMP4O75379 141 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 PARP10Q53GL7 1025 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 C9orf131Q5VYM1 1079 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 DIEXFQ68CQ4 756 aaKnown RBP13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 PRPF40BQ6NWY9 871 aaKnown RBP13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 OLFM4Q6UX06 510 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 PPP1R42Q7Z4L9 355 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 SLC51AQ86UW1 340 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 C7orf43Q8WVR3 580 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 ISCA1Q9BUE6 129 aa13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 UTP14AQ9BVJ6 771 aaKnown RBP13.22□□□□□ -0.29
GTF3C1-213ENST00000571886 IBTKQ9P2D0 1353 aaPredicted RBP13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 NPR1P16066 1061 aa13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 HSP90AB3PQ58FF7 597 aa13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 SLC10A5Q5PT55 438 aa13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 ZNF526Q8TF50 670 aaPredicted RBP13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
GTF3C1-213ENST00000571886 FER1L6Q2WGJ9 1857 aa13.21□□□□□ -0.3
GTF3C1-213ENST00000571886 LAMB2P55268 1798 aa13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 HCLS1P14317 486 aaPredicted RBP13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 GOLGA2Q08379 1002 aa13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 CRY2Q49AN0 593 aa13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 RIC3Q7Z5B4 369 aa13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 TAF1P21675 1872 aa13.2□□□□□ -0.3
GTF3C1-213ENST00000571886 SLC4A2P04920 1241 aa13.19□□□□□ -0.3
GTF3C1-213ENST00000571886 JARID2Q92833 1246 aaPredicted RBP13.19□□□□□ -0.3
GTF3C1-213ENST00000571886 MYD88Q99836 296 aa13.19□□□□□ -0.3
GTF3C1-213ENST00000571886 RNF181Q9P0P0 153 aa13.19□□□□□ -0.3
GTF3C1-213ENST00000571886 TRMT112Q9UI30 125 aaKnown RBP13.19□□□□□ -0.3
GTF3C1-213ENST00000571886 RTL5Q5HYW3 569 aaPredicted RBP13.18□□□□□ -0.3
GTF3C1-213ENST00000571886 FAM89AQ96GI7 184 aa13.18□□□□□ -0.3
GTF3C1-213ENST00000571886 CDCA7LQ96GN5 454 aa13.18□□□□□ -0.3
GTF3C1-213ENST00000571886 MAP3K2Q9Y2U5 619 aa13.18□□□□□ -0.3
GTF3C1-213ENST00000571886 DDX60Q8IY21 1712 aaKnown RBP13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 RIC1Q4ADV7 1423 aa13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 PI4KAP2A4QPH2 592 aa13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 HOXA10P31260 410 aaPredicted RBP13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 TRIM28Q13263 835 aaKnown RBP13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 PI4KAP1Q8N8J0 262 aa13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 NLRP3Q96P20 1036 aa13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 METTL22Q9BUU2 404 aaPredicted RBP13.17□□□□□ -0.3
GTF3C1-213ENST00000571886 SH3TC1Q8TE82 1336 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 CACNA1FO60840 1977 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 ALDH1B1P30837 517 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 KSR2Q6VAB6 950 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 RPGRQ92834 1020 aaKnown RBP13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 STK31Q9BXU1 1019 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 MYH16Q9H6N6 1097 aa13.16□□□□□ -0.3
GTF3C1-213ENST00000571886 IGKV5-2P06315 115 aa13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 LMNB1P20700 586 aa13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 SLFN5Q08AF3 891 aa13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 RBM17Q96I25 401 aaKnown RBP13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 CRAMP1Q96RY5 1269 aa13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 GPBP1L1Q9HC44 474 aaPredicted RBP13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 DICER1Q9UPY3 1922 aaKnown RBP13.15□□□□□ -0.3
GTF3C1-213ENST00000571886 COL4A1P02462 1669 aa13.15□□□□□ -0.31
GTF3C1-213ENST00000571886 RNF123Q5XPI4 1314 aa13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 SNED1Q8TER0 1413 aa13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 DDX58O95786 925 aaKnown RBP13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 FLIIQ13045 1269 aa13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 CCDC93Q567U6 631 aa13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 CHMP4AQ9BY43 222 aa13.14□□□□□ -0.31
GTF3C1-213ENST00000571886 ABCC4O15439 1325 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 IRS4O14654 1257 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 KIF3CO14782 793 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 CWF19L2Q2TBE0 894 aaKnown RBP13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 ZBTB38Q8NAP3 1195 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 CCDC191Q8NCU4 936 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 TAOK3Q9H2K8 898 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 NMRK2Q9NPI5 230 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 LTBP3Q9NS15 1303 aa13.13□□□□□ -0.31
GTF3C1-213ENST00000571886 E9PSI1 815 aa13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 F6X3S4 739 aa13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 PPEF1O14829 653 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 FKBP4Q02790 459 aaKnown RBP eCLIP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 SF3B3Q15393 1217 aaKnown RBP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 TRMT2AQ8IZ69 625 aaKnown RBP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 ZNF277Q9NRM2 450 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 CWC25Q9NXE8 425 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 TIAM2Q8IVF5 1701 aa13.12□□□□□ -0.31
GTF3C1-213ENST00000571886 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
GTF3C1-213ENST00000571886 PCCAP05165 728 aaPredicted RBP13.11□□□□□ -0.31
GTF3C1-213ENST00000571886 FKBP5Q13451 457 aaPredicted RBP13.11□□□□□ -0.31
GTF3C1-213ENST00000571886 SOGA3Q5TF21 947 aa13.11□□□□□ -0.31
GTF3C1-213ENST00000571886 C1QTNF8P60827 252 aa13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 GRAPQ13588 217 aa13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 RTKN2Q8IZC4 609 aa13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 GRAPLQ8TC17 118 aaPredicted RBP13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 DNAAF4Q8WXU2 420 aa13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 CELF1Q92879 486 aaKnown RBP13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 CCDC85AQ96PX6 553 aaPredicted RBP13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 RRAGCQ9HB90 399 aa13.1□□□□□ -0.31
GTF3C1-213ENST00000571886 COL4A5P29400 1685 aa13.09□□□□□ -0.31
GTF3C1-213ENST00000571886 GLTPD2A6NH11 291 aa13.09□□□□□ -0.31
GTF3C1-213ENST00000571886 H7C1W4 665 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms