RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 FKBP4Q02790 459 aaKnown RBP eCLIP12.69□□□□□ -0.38
CIITA-207ENST00000571545 TTLL7Q6ZT98 887 aa12.69□□□□□ -0.38
CIITA-207ENST00000571545 TMX4Q9H1E5 349 aaPredicted RBP12.69□□□□□ -0.38
CIITA-207ENST00000571545 ADAMTS8Q9UP79 889 aa12.69□□□□□ -0.38
CIITA-207ENST00000571545 ABCC12Q96J65 1359 aa12.69□□□□□ -0.38
CIITA-207ENST00000571545 IQCA1LA6NCM1 817 aa12.68□□□□□ -0.38
CIITA-207ENST00000571545 ZNF34Q8IZ26 560 aa12.68□□□□□ -0.38
CIITA-207ENST00000571545 C7orf43Q8WVR3 580 aa12.68□□□□□ -0.38
CIITA-207ENST00000571545 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
CIITA-207ENST00000571545 DDX21Q9NR30 783 aaKnown RBP eCLIP12.68□□□□□ -0.38
CIITA-207ENST00000571545 SCN4AP35499 1836 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 UBN2Q6ZU65 1347 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 NTSR2O95665 410 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 GPTP24298 496 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 PRELPP51888 382 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 RBM17Q96I25 401 aaKnown RBP12.67□□□□□ -0.38
CIITA-207ENST00000571545 UTP14AQ9BVJ6 771 aaKnown RBP12.67□□□□□ -0.38
CIITA-207ENST00000571545 TRIM35Q9UPQ4 493 aa12.67□□□□□ -0.38
CIITA-207ENST00000571545 LAS1LQ9Y4W2 734 aaKnown RBP12.67□□□□□ -0.38
CIITA-207ENST00000571545 HOXA10P31260 410 aaPredicted RBP12.66□□□□□ -0.38
CIITA-207ENST00000571545 PDIA6Q15084 440 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 HDGFL1Q5TGJ6 251 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 LRP10Q7Z4F1 713 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 NLRP3Q96P20 1036 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 PSMD1Q99460 953 aa12.66□□□□□ -0.38
CIITA-207ENST00000571545 DBF4Q9UBU7 674 aaPredicted RBP12.66□□□□□ -0.38
CIITA-207ENST00000571545 GNAI1P63096 354 aa12.65□□□□□ -0.38
CIITA-207ENST00000571545 SUSD4Q5VX71 490 aa12.65□□□□□ -0.38
CIITA-207ENST00000571545 CRAMP1Q96RY5 1269 aa12.65□□□□□ -0.38
CIITA-207ENST00000571545 IFT57Q9NWB7 429 aa12.65□□□□□ -0.38
CIITA-207ENST00000571545 HYPKQ9NX55 129 aa12.65□□□□□ -0.38
CIITA-207ENST00000571545 COPS6Q7L5N1 327 aa12.64□□□□□ -0.39
CIITA-207ENST00000571545 XAGE3Q8WTP9 111 aa12.64□□□□□ -0.39
CIITA-207ENST00000571545 JDP2Q8WYK2 163 aa12.64□□□□□ -0.39
CIITA-207ENST00000571545 L3MBTL3Q96JM7 780 aaPredicted RBP12.64□□□□□ -0.39
CIITA-207ENST00000571545 CEP350Q5VT06 3117 aa12.64□□□□□ -0.39
CIITA-207ENST00000571545 SH3TC1Q8TE82 1336 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 PPEF1O14829 653 aaPredicted RBP12.63□□□□□ -0.39
CIITA-207ENST00000571545 MYCNP04198 464 aaPredicted RBP12.63□□□□□ -0.39
CIITA-207ENST00000571545 HSP90B1P14625 803 aaKnown RBP12.63□□□□□ -0.39
CIITA-207ENST00000571545 IARSP41252 1262 aaKnown RBP12.63□□□□□ -0.39
CIITA-207ENST00000571545 AIMP1Q12904 312 aaKnown RBP12.63□□□□□ -0.39
CIITA-207ENST00000571545 TCIRG1Q13488 830 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 PROSER3Q2NL68 480 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 SLC10A5Q5PT55 438 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 PLBD2Q8NHP8 589 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 CHPF2Q9P2E5 772 aa12.63□□□□□ -0.39
CIITA-207ENST00000571545 LAMB2P55268 1798 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 SAMD1Q6SPF0 538 aaPredicted RBP12.62□□□□□ -0.39
CIITA-207ENST00000571545 TMC4Q7Z404 712 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 SUPT20HQ8NEM7 779 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 NECTIN2Q92692 538 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 VPS33BQ9H267 617 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 ZNF277Q9NRM2 450 aaPredicted RBP12.62□□□□□ -0.39
CIITA-207ENST00000571545 MBIPQ9NS73 344 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 SNED1Q8TER0 1413 aa12.62□□□□□ -0.39
CIITA-207ENST00000571545 APAF1O14727 1248 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 DDNO94850 711 aaPredicted RBP12.61□□□□□ -0.39
CIITA-207ENST00000571545 ANXA1P04083 346 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 ZNF853P0CG23 659 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 GOLGA2Q08379 1002 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 DUSP27Q5VZP5 1158 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 ANKRD13DQ6ZTN6 518 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 NLRP10Q86W26 655 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 SYNE4Q8N205 404 aa12.61□□□□□ -0.39
CIITA-207ENST00000571545 TRMT112Q9UI30 125 aaKnown RBP12.61□□□□□ -0.39
CIITA-207ENST00000571545 FZD9O00144 591 aa12.6□□□□□ -0.39
CIITA-207ENST00000571545 BBOX1O75936 387 aa12.6□□□□□ -0.39
CIITA-207ENST00000571545 EIF6P56537 245 aaKnown RBP12.6□□□□□ -0.39
CIITA-207ENST00000571545 CHADLQ6NUI6 762 aa12.6□□□□□ -0.39
CIITA-207ENST00000571545 DDX46Q7L014 1031 aaKnown RBP12.6□□□□□ -0.39
CIITA-207ENST00000571545 PNMA8AQ86V59 439 aaPredicted RBP12.6□□□□□ -0.39
CIITA-207ENST00000571545 LDHDQ86WU2 507 aa12.6□□□□□ -0.39
CIITA-207ENST00000571545 GPC2Q8N158 579 aa12.6□□□□□ -0.39
CIITA-207ENST00000571545 POTECB2RU33 542 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 ANP32CO43423 234 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 CCDC27Q2M243 656 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 KRT24Q2M2I5 525 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 LARGE2Q8N3Y3 721 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 KLRG1Q96E93 195 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 HACL1Q9UJ83 578 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 ATP6V0A2Q9Y487 856 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 ABCC4O15439 1325 aa12.59□□□□□ -0.39
CIITA-207ENST00000571545 DDX58O95786 925 aaKnown RBP12.58□□□□□ -0.4
CIITA-207ENST00000571545 LMOD1P29536 600 aaPredicted RBP12.58□□□□□ -0.4
CIITA-207ENST00000571545 GRAPQ13588 217 aa12.58□□□□□ -0.4
CIITA-207ENST00000571545 CCDC30Q5VVM6 783 aa12.58□□□□□ -0.4
CIITA-207ENST00000571545 DDX60Q8IY21 1712 aaKnown RBP12.58□□□□□ -0.4
CIITA-207ENST00000571545 NIM1KQ8IY84 436 aa12.58□□□□□ -0.4
CIITA-207ENST00000571545 DNAJC5GQ8N7S2 189 aa12.58□□□□□ -0.4
CIITA-207ENST00000571545 GRAPLQ8TC17 118 aaPredicted RBP12.58□□□□□ -0.4
CIITA-207ENST00000571545 TAF1DQ9H5J8 278 aaPredicted RBP12.58□□□□□ -0.4
CIITA-207ENST00000571545 ZNF541Q9H0D2 1346 aa12.58□□□□□ -0.4
CIITA-207ENST00000571545 LRRC37AA6NMS7 1700 aa12.57□□□□□ -0.4
CIITA-207ENST00000571545 TRIM28Q13263 835 aaKnown RBP12.57□□□□□ -0.4
CIITA-207ENST00000571545 OLFM4Q6UX06 510 aa12.57□□□□□ -0.4
CIITA-207ENST00000571545 RIC3Q7Z5B4 369 aa12.57□□□□□ -0.4
CIITA-207ENST00000571545 ISCA1Q9BUE6 129 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms