RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 GTF3C3Q9Y5Q9 886 aa9.82□□□□□ -0.84
CHD3-213ENST00000571249 A0A1W2PP64 1363 aa9.82□□□□□ -0.84
CHD3-213ENST00000571249 RTL1A6NKG5 1358 aa9.82□□□□□ -0.84
CHD3-213ENST00000571249 COL15A1P39059 1388 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 GPR25O00155 361 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 SLC10A3P09131 477 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 CABP4P57796 275 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 CDC37L1Q7L3B6 337 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 PRO3102Q9H379 93 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 GPRC5DQ9NZD1 345 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 ZBTB1Q9Y2K1 713 aa9.81□□□□□ -0.84
CHD3-213ENST00000571249 INTS3Q68E01 1043 aaKnown RBP9.8□□□□□ -0.84
CHD3-213ENST00000571249 Q7L0L9 218 aa9.8□□□□□ -0.84
CHD3-213ENST00000571249 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.8□□□□□ -0.84
CHD3-213ENST00000571249 RTKN2Q8IZC4 609 aa9.8□□□□□ -0.84
CHD3-213ENST00000571249 GBA2Q9HCG7 927 aaPredicted RBP9.8□□□□□ -0.84
CHD3-213ENST00000571249 TERF2IPQ9NYB0 399 aa9.8□□□□□ -0.84
CHD3-213ENST00000571249 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.8□□□□□ -0.84
CHD3-213ENST00000571249 TJP1Q07157 1748 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 SHTN1A0MZ66 631 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 CYP19A1P11511 503 aaPredicted RBP9.79□□□□□ -0.84
CHD3-213ENST00000571249 SLC51AQ86UW1 340 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 NFATC2IPQ8NCF5 419 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 SPRYD3Q8NCJ5 442 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 TRPM4Q8TD43 1214 aa9.79□□□□□ -0.84
CHD3-213ENST00000571249 PLA2G5P39877 138 aa9.78□□□□□ -0.84
CHD3-213ENST00000571249 NBR1Q14596 966 aa9.78□□□□□ -0.84
CHD3-213ENST00000571249 C2orf69Q8N8R5 385 aa9.78□□□□□ -0.84
CHD3-213ENST00000571249 EYA1Q99502 592 aa9.78□□□□□ -0.84
CHD3-213ENST00000571249 ERBB4Q15303 1308 aa9.78□□□□□ -0.84
CHD3-213ENST00000571249 ECM2O94769 699 aaPredicted RBP9.77□□□□□ -0.85
CHD3-213ENST00000571249 CANXP27824 592 aaKnown RBP9.77□□□□□ -0.85
CHD3-213ENST00000571249 GMPSP49915 693 aaPredicted RBP9.77□□□□□ -0.85
CHD3-213ENST00000571249 RASAL3Q86YV0 1011 aa9.77□□□□□ -0.85
CHD3-213ENST00000571249 LARGE2Q8N3Y3 721 aa9.77□□□□□ -0.85
CHD3-213ENST00000571249 CNBD1Q8NA66 436 aa9.77□□□□□ -0.85
CHD3-213ENST00000571249 GGNBP2Q9H3C7 697 aa9.77□□□□□ -0.85
CHD3-213ENST00000571249 TRIM17Q9Y577 477 aa9.77□□□□□ -0.85
CHD3-213ENST00000571249 TONSLQ96HA7 1378 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 BCORQ6W2J9 1755 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 FKTNO75072 461 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 NPR1P16066 1061 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 DEFB123Q8N688 67 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 ZC3H15Q8WU90 426 aaKnown RBP9.76□□□□□ -0.85
CHD3-213ENST00000571249 STXBP5LQ9Y2K9 1186 aa9.76□□□□□ -0.85
CHD3-213ENST00000571249 RAB3GAP2Q9H2M9 1393 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 NCAPD2Q15021 1401 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 WTIPA6NIX2 430 aaPredicted RBP9.75□□□□□ -0.85
CHD3-213ENST00000571249 ADM5C9JUS6 153 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 NPHP1O15259 732 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 OTOP1Q7RTM1 612 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 FAM122AQ96E09 287 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 PSMD1Q99460 953 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 TBC1D2BQ9UPU7 963 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 EMILIN1Q9Y6C2 1016 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 FLT4P35916 1363 aa9.75□□□□□ -0.85
CHD3-213ENST00000571249 SNED1Q8TER0 1413 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 EYSQ5T1H1 3165 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 ARFGEF2Q9Y6D5 1785 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 ST5P78524 1137 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 CXCL9Q07325 125 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 KRT26Q7Z3Y9 468 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 DPF3Q92784 378 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 TSHZ2Q9NRE2 1034 aa9.74□□□□□ -0.85
CHD3-213ENST00000571249 FYB1O15117 783 aa9.73□□□□□ -0.85
CHD3-213ENST00000571249 MYCP01106 439 aaPredicted RBP9.73□□□□□ -0.85
CHD3-213ENST00000571249 REM2Q8IYK8 340 aaPredicted RBP9.73□□□□□ -0.85
CHD3-213ENST00000571249 ARMC5Q96C12 935 aa9.73□□□□□ -0.85
CHD3-213ENST00000571249 SETDB2Q96T68 719 aa9.73□□□□□ -0.85
CHD3-213ENST00000571249 PIEZO1Q92508 2521 aa9.73□□□□□ -0.85
CHD3-213ENST00000571249 ST20-MTHFSA0A0A6YYL1 179 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 PPM1GO15355 546 aaPredicted RBP9.72□□□□□ -0.85
CHD3-213ENST00000571249 MTHFSP49914 203 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 EIF5P55010 431 aaKnown RBP9.72□□□□□ -0.85
CHD3-213ENST00000571249 SLC39A6Q13433 755 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 NOM1Q5C9Z4 860 aaKnown RBP9.72□□□□□ -0.85
CHD3-213ENST00000571249 TMEM106CQ9BVX2 250 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 MTMR10Q9NXD2 777 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 PTPN22Q9Y2R2 807 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 U3KPZ7 1027 aaPredicted RBP9.72□□□□□ -0.85
CHD3-213ENST00000571249 PRUNE2Q8WUY3 3088 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 RBBP6Q7Z6E9 1792 aaKnown RBP9.72□□□□□ -0.85
CHD3-213ENST00000571249 NPC1L1Q9UHC9 1359 aa9.72□□□□□ -0.85
CHD3-213ENST00000571249 KLRG2A4D1S0 409 aaPredicted RBP9.71□□□□□ -0.86
CHD3-213ENST00000571249 EGFRP00533 1210 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 HSP90AB1P08238 724 aaKnown RBP9.71□□□□□ -0.86
CHD3-213ENST00000571249 CAP1Q01518 475 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 MKRN3Q13064 507 aaKnown RBP9.71□□□□□ -0.86
CHD3-213ENST00000571249 MOB2Q70IA6 237 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 SAMD7Q7Z3H4 446 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 NIM1KQ8IY84 436 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 SPOCK2Q92563 424 aa9.71□□□□□ -0.86
CHD3-213ENST00000571249 CNOT7Q9UIV1 285 aaKnown RBP9.71□□□□□ -0.86
CHD3-213ENST00000571249 LAMA2P24043 3122 aaKnown RBP9.71□□□□□ -0.86
CHD3-213ENST00000571249 POLR2AP24928 1970 aaKnown RBP9.7□□□□□ -0.86
CHD3-213ENST00000571249 TCERG1O14776 1098 aaKnown RBP9.7□□□□□ -0.86
CHD3-213ENST00000571249 TM4SF4P48230 202 aa9.7□□□□□ -0.86
CHD3-213ENST00000571249 AOC3Q16853 763 aa9.7□□□□□ -0.86
CHD3-213ENST00000571249 BCL2L13Q9BXK5 485 aa9.7□□□□□ -0.86
CHD3-213ENST00000571249 ZNF330Q9Y3S2 320 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms