RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 UBR2Q8IWV8 1755 aa17.4■□□□□ 0.38
CCDC40-205ENST00000571028 IARSP41252 1262 aaKnown RBP17.4■□□□□ 0.38
CCDC40-205ENST00000571028 C7orf43Q8WVR3 580 aa17.4■□□□□ 0.38
CCDC40-205ENST00000571028 CAPNS2Q96L46 248 aa17.4■□□□□ 0.38
CCDC40-205ENST00000571028 DDX21Q9NR30 783 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC40-205ENST00000571028 GJA3Q9Y6H8 435 aa17.39■□□□□ 0.37
CCDC40-205ENST00000571028 VIRMAQ69YN4 1812 aaKnown RBP17.39■□□□□ 0.37
CCDC40-205ENST00000571028 CACNA1SQ13698 1873 aa17.38■□□□□ 0.37
CCDC40-205ENST00000571028 HTATSF1O43719 755 aaKnown RBP17.38■□□□□ 0.37
CCDC40-205ENST00000571028 ALDH1B1P30837 517 aa17.38■□□□□ 0.37
CCDC40-205ENST00000571028 EIF6P56537 245 aaKnown RBP17.38■□□□□ 0.37
CCDC40-205ENST00000571028 TPTE2Q6XPS3 522 aa17.38■□□□□ 0.37
CCDC40-205ENST00000571028 SYNE4Q8N205 404 aa17.38■□□□□ 0.37
CCDC40-205ENST00000571028 GPR101Q96P66 508 aaPredicted RBP17.38■□□□□ 0.37
CCDC40-205ENST00000571028 FZD9O00144 591 aa17.37■□□□□ 0.37
CCDC40-205ENST00000571028 GTF2E1P29083 439 aaPredicted RBP17.37■□□□□ 0.37
CCDC40-205ENST00000571028 LMOD3Q0VAK6 560 aa17.37■□□□□ 0.37
CCDC40-205ENST00000571028 OLFM4Q6UX06 510 aa17.37■□□□□ 0.37
CCDC40-205ENST00000571028 CLEC4GQ6UXB4 293 aa17.37■□□□□ 0.37
CCDC40-205ENST00000571028 LAS1LQ9Y4W2 734 aaKnown RBP17.37■□□□□ 0.37
CCDC40-205ENST00000571028 ARFGEF2Q9Y6D5 1785 aa17.37■□□□□ 0.37
CCDC40-205ENST00000571028 FAM177BA6PVY3 158 aa17.36■□□□□ 0.37
CCDC40-205ENST00000571028 CYP4F22Q6NT55 531 aa17.36■□□□□ 0.37
CCDC40-205ENST00000571028 MIS18AQ9NYP9 233 aa17.36■□□□□ 0.37
CCDC40-205ENST00000571028 ADAMTSL1Q8N6G6 1762 aa17.35■□□□□ 0.37
CCDC40-205ENST00000571028 BTBD11A6QL63 1104 aa17.35■□□□□ 0.37
CCDC40-205ENST00000571028 RGS19P49795 217 aa17.35■□□□□ 0.37
CCDC40-205ENST00000571028 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
CCDC40-205ENST00000571028 NIP7Q9Y221 180 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC40-205ENST00000571028 PIP4K2AP48426 406 aaPredicted RBP17.34■□□□□ 0.37
CCDC40-205ENST00000571028 CEMIPQ8WUJ3 1361 aa17.34■□□□□ 0.37
CCDC40-205ENST00000571028 TSKSQ9UJT2 592 aa17.34■□□□□ 0.37
CCDC40-205ENST00000571028 KLRG2A4D1S0 409 aaPredicted RBP17.33■□□□□ 0.36
CCDC40-205ENST00000571028 KCNQ3O43525 872 aa17.33■□□□□ 0.36
CCDC40-205ENST00000571028 TAF7Q15545 349 aaPredicted RBP17.33■□□□□ 0.36
CCDC40-205ENST00000571028 PSMD1Q99460 953 aa17.33■□□□□ 0.36
CCDC40-205ENST00000571028 CA12O43570 354 aa17.32■□□□□ 0.36
CCDC40-205ENST00000571028 MAP2K2P36507 400 aa17.32■□□□□ 0.36
CCDC40-205ENST00000571028 DLG5Q8TDM6 1919 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 BCORQ6W2J9 1755 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 CC2D2BQ6DHV5 1058 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 USP50Q70EL3 339 aaPredicted RBP17.31■□□□□ 0.36
CCDC40-205ENST00000571028 LARGE2Q8N3Y3 721 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 TLL2Q9Y6L7 1015 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 THSD7BQ9C0I4 1608 aa17.31■□□□□ 0.36
CCDC40-205ENST00000571028 TRAF5O00463 557 aa17.3■□□□□ 0.36
CCDC40-205ENST00000571028 AOC2O75106 756 aa17.3■□□□□ 0.36
CCDC40-205ENST00000571028 EPS15P42566 896 aa17.3■□□□□ 0.36
CCDC40-205ENST00000571028 FMR1Q06787 632 aaKnown RBP eCLIP17.3■□□□□ 0.36
CCDC40-205ENST00000571028 MCOLN1Q9GZU1 580 aa17.3■□□□□ 0.36
CCDC40-205ENST00000571028 USP16Q9Y5T5 823 aa17.3■□□□□ 0.36
CCDC40-205ENST00000571028 SNRPA1P09661 255 aaKnown RBP17.29■□□□□ 0.36
CCDC40-205ENST00000571028 SCNN1DP51172 638 aa17.29■□□□□ 0.36
CCDC40-205ENST00000571028 RPGRQ92834 1020 aaKnown RBP17.29■□□□□ 0.36
CCDC40-205ENST00000571028 TSPYL4Q9UJ04 414 aa17.29■□□□□ 0.36
CCDC40-205ENST00000571028 RGL2O15211 777 aa17.28■□□□□ 0.36
CCDC40-205ENST00000571028 GRIPAP1Q4V328 841 aa17.28■□□□□ 0.36
CCDC40-205ENST00000571028 CST9Q5W186 159 aa17.28■□□□□ 0.36
CCDC40-205ENST00000571028 NIM1KQ8IY84 436 aa17.28■□□□□ 0.36
CCDC40-205ENST00000571028 NYXQ9GZU5 481 aa17.28■□□□□ 0.36
CCDC40-205ENST00000571028 TMX4Q9H1E5 349 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-205ENST00000571028 CELF2O95319 508 aaKnown RBP17.27■□□□□ 0.36
CCDC40-205ENST00000571028 DGKZQ13574 1117 aa17.27■□□□□ 0.36
CCDC40-205ENST00000571028 WWC1Q8IX03 1113 aa17.27■□□□□ 0.36
CCDC40-205ENST00000571028 ADARB2Q9NS39 739 aaKnown RBP17.26■□□□□ 0.35
CCDC40-205ENST00000571028 PRAMEF22A3QJZ6 481 aa17.25■□□□□ 0.35
CCDC40-205ENST00000571028 BRPF1P55201 1214 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-205ENST00000571028 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
CCDC40-205ENST00000571028 SAPCD2Q86UD0 394 aa17.25■□□□□ 0.35
CCDC40-205ENST00000571028 ZNF408Q9H9D4 720 aa17.25■□□□□ 0.35
CCDC40-205ENST00000571028 PPIP5K2O43314 1243 aa17.24■□□□□ 0.35
CCDC40-205ENST00000571028 CCDC27Q2M243 656 aa17.24■□□□□ 0.35
CCDC40-205ENST00000571028 CRY2Q49AN0 593 aa17.24■□□□□ 0.35
CCDC40-205ENST00000571028 NUTM1Q86Y26 1132 aa17.24■□□□□ 0.35
CCDC40-205ENST00000571028 SIPA1L3O60292 1781 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-205ENST00000571028 TCERG1O14776 1098 aaKnown RBP17.23■□□□□ 0.35
CCDC40-205ENST00000571028 PPEF1O14829 653 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-205ENST00000571028 HNRNPUQ00839 825 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC40-205ENST00000571028 RBM17Q96I25 401 aaKnown RBP17.23■□□□□ 0.35
CCDC40-205ENST00000571028 LTBP1Q14766 1721 aa17.23■□□□□ 0.35
CCDC40-205ENST00000571028 SNED1Q8TER0 1413 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 NBPF26B4DH59 902 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 CHL1O00533 1208 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 GNAI1P63096 354 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 HLFQ16534 295 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 CIAPIN1Q6FI81 312 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 NBPF10Q6P3W6 841 aaKnown RBP17.22■□□□□ 0.35
CCDC40-205ENST00000571028 NBPF15Q8N660 670 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 HHIPL1Q96JK4 782 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 MBIPQ9NS73 344 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 GPRC5DQ9NZD1 345 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 ABCC12Q96J65 1359 aa17.22■□□□□ 0.35
CCDC40-205ENST00000571028 COL4A5P29400 1685 aa17.21■□□□□ 0.35
CCDC40-205ENST00000571028 EIF4A1P60842 406 aaKnown RBP17.21■□□□□ 0.35
CCDC40-205ENST00000571028 KRT24Q2M2I5 525 aa17.21■□□□□ 0.35
CCDC40-205ENST00000571028 KIF6Q6ZMV9 814 aa17.21■□□□□ 0.35
CCDC40-205ENST00000571028 NGEFQ8N5V2 710 aa17.21■□□□□ 0.35
CCDC40-205ENST00000571028 TSR2Q969E8 191 aaKnown RBP17.21■□□□□ 0.35
CCDC40-205ENST00000571028 GLIS2Q9BZE0 524 aaPredicted RBP17.21■□□□□ 0.35
CCDC40-205ENST00000571028 IFT57Q9NWB7 429 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms