RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 STYK1Q6J9G0 422 aa19.44■□□□□ 0.7
VPS39-210ENST00000568357 ANKRD13DQ6ZTN6 518 aa19.44■□□□□ 0.7
VPS39-210ENST00000568357 MASTLQ96GX5 879 aa19.44■□□□□ 0.7
VPS39-210ENST00000568357 TIAM2Q8IVF5 1701 aa19.43■□□□□ 0.7
VPS39-210ENST00000568357 NTSR2O95665 410 aa19.43■□□□□ 0.7
VPS39-210ENST00000568357 PARP10Q53GL7 1025 aa19.43■□□□□ 0.7
VPS39-210ENST00000568357 PLBD2Q8NHP8 589 aa19.43■□□□□ 0.7
VPS39-210ENST00000568357 PHAXQ9H814 394 aaKnown RBP19.43■□□□□ 0.7
VPS39-210ENST00000568357 SPINK5Q9NQ38 1064 aaPredicted RBP19.43■□□□□ 0.7
VPS39-210ENST00000568357 ABCC12Q96J65 1359 aa19.43■□□□□ 0.7
VPS39-210ENST00000568357 SLC34A2O95436 690 aa19.42■□□□□ 0.7
VPS39-210ENST00000568357 HSP90AB3PQ58FF7 597 aa19.42■□□□□ 0.7
VPS39-210ENST00000568357 CNKSR1Q969H4 720 aa19.42■□□□□ 0.7
VPS39-210ENST00000568357 ZNF219Q9P2Y4 722 aaPredicted RBP19.42■□□□□ 0.7
VPS39-210ENST00000568357 C21orf2O43822 256 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 NPR1P16066 1061 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 CCDC30Q5VVM6 783 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 PPP1R42Q7Z4L9 355 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 NLRP10Q86W26 655 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 UTP14AQ9BVJ6 771 aaKnown RBP19.41■□□□□ 0.7
VPS39-210ENST00000568357 FANCIQ9NVI1 1328 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 NUP98P52948 1817 aa19.41■□□□□ 0.7
VPS39-210ENST00000568357 IBTKQ9P2D0 1353 aaPredicted RBP19.41■□□□□ 0.7
VPS39-210ENST00000568357 TCERG1O14776 1098 aaKnown RBP19.4■□□□□ 0.7
VPS39-210ENST00000568357 TWISTNBQ3B726 338 aaPredicted RBP19.4■□□□□ 0.7
VPS39-210ENST00000568357 PRPF40BQ6NWY9 871 aaKnown RBP19.4■□□□□ 0.7
VPS39-210ENST00000568357 ZNF428Q96B54 188 aa19.4■□□□□ 0.7
VPS39-210ENST00000568357 CCER2I3L3R5 266 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 RASSF7Q02833 373 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 CRY2Q49AN0 593 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 SLC10A5Q5PT55 438 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 C3orf67Q6ZVT6 689 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 SYNE4Q8N205 404 aa19.39■□□□□ 0.69
VPS39-210ENST00000568357 ATP5J2-PTCD1G3V325 749 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 NFKBIEO00221 500 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 COL11A2P13942 1736 aaPredicted RBP19.38■□□□□ 0.69
VPS39-210ENST00000568357 CCDC88AQ3V6T2 1871 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 C7orf43Q8WVR3 580 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 ISCA1Q9BUE6 129 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 CHMP4AQ9BY43 222 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 DLEC1Q9Y238 1755 aa19.38■□□□□ 0.69
VPS39-210ENST00000568357 EXOSC9Q06265 439 aaKnown RBP19.37■□□□□ 0.69
VPS39-210ENST00000568357 GOLGA2Q08379 1002 aa19.37■□□□□ 0.69
VPS39-210ENST00000568357 RIC3Q7Z5B4 369 aa19.37■□□□□ 0.69
VPS39-210ENST00000568357 TRMT112Q9UI30 125 aaKnown RBP19.37■□□□□ 0.69
VPS39-210ENST00000568357 ZNF521Q96K83 1311 aa19.36■□□□□ 0.69
VPS39-210ENST00000568357 VAMP4O75379 141 aa19.36■□□□□ 0.69
VPS39-210ENST00000568357 HCLS1P14317 486 aaPredicted RBP19.35■□□□□ 0.69
VPS39-210ENST00000568357 ALDH1B1P30837 517 aa19.35■□□□□ 0.69
VPS39-210ENST00000568357 HOXA10P31260 410 aaPredicted RBP19.35■□□□□ 0.69
VPS39-210ENST00000568357 OLFM4Q6UX06 510 aa19.35■□□□□ 0.69
VPS39-210ENST00000568357 SLC4A2P04920 1241 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 LMNB1P20700 586 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 TRIM28Q13263 835 aaKnown RBP19.34■□□□□ 0.69
VPS39-210ENST00000568357 G2E3Q7L622 706 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 NLRP3Q96P20 1036 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 STK31Q9BXU1 1019 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 RIC1Q4ADV7 1423 aa19.34■□□□□ 0.69
VPS39-210ENST00000568357 RNF123Q5XPI4 1314 aa19.33■□□□□ 0.69
VPS39-210ENST00000568357 SH3TC1Q8TE82 1336 aa19.33■□□□□ 0.69
VPS39-210ENST00000568357 DIEXFQ68CQ4 756 aaKnown RBP19.33■□□□□ 0.68
VPS39-210ENST00000568357 RPGRQ92834 1020 aaKnown RBP19.33■□□□□ 0.68
VPS39-210ENST00000568357 MYH16Q9H6N6 1097 aa19.33■□□□□ 0.68
VPS39-210ENST00000568357 SLX4Q8IY92 1834 aa19.32■□□□□ 0.68
VPS39-210ENST00000568357 MIER1Q8N108 512 aa19.32■□□□□ 0.68
VPS39-210ENST00000568357 FAM89AQ96GI7 184 aa19.32■□□□□ 0.68
VPS39-210ENST00000568357 RBM17Q96I25 401 aaKnown RBP19.32■□□□□ 0.68
VPS39-210ENST00000568357 MYD88Q99836 296 aa19.32■□□□□ 0.68
VPS39-210ENST00000568357 ZC3H4Q9UPT8 1303 aaKnown RBP19.31■□□□□ 0.68
VPS39-210ENST00000568357 DDX58O95786 925 aaKnown RBP19.31■□□□□ 0.68
VPS39-210ENST00000568357 SOGA3Q5TF21 947 aa19.31■□□□□ 0.68
VPS39-210ENST00000568357 KSR2Q6VAB6 950 aa19.31■□□□□ 0.68
VPS39-210ENST00000568357 CRAMP1Q96RY5 1269 aa19.31■□□□□ 0.68
VPS39-210ENST00000568357 METTL22Q9BUU2 404 aaPredicted RBP19.31■□□□□ 0.68
VPS39-210ENST00000568357 MAP3K2Q9Y2U5 619 aa19.31■□□□□ 0.68
VPS39-210ENST00000568357 PI4KAP2A4QPH2 592 aa19.3■□□□□ 0.68
VPS39-210ENST00000568357 VEGFAP15692 232 aaPredicted RBP19.3■□□□□ 0.68
VPS39-210ENST00000568357 RTL5Q5HYW3 569 aaPredicted RBP19.3■□□□□ 0.68
VPS39-210ENST00000568357 PI4KAP1Q8N8J0 262 aa19.3■□□□□ 0.68
VPS39-210ENST00000568357 TAOK3Q9H2K8 898 aa19.3■□□□□ 0.68
VPS39-210ENST00000568357 GLTPD2A6NH11 291 aa19.29■□□□□ 0.68
VPS39-210ENST00000568357 CCDC93Q567U6 631 aa19.29■□□□□ 0.68
VPS39-210ENST00000568357 SLC51AQ86UW1 340 aa19.29■□□□□ 0.68
VPS39-210ENST00000568357 LTBP3Q9NS15 1303 aa19.28■□□□□ 0.68
VPS39-210ENST00000568357 MKRN1Q9UHC7 482 aaKnown RBP19.28■□□□□ 0.68
VPS39-210ENST00000568357 POTECB2RU33 542 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 FOXN1O15353 648 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 IGKV5-2P06315 115 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 FLIIQ13045 1269 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 RTKN2Q8IZC4 609 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 ZBTB38Q8NAP3 1195 aaPredicted RBP19.27■□□□□ 0.68
VPS39-210ENST00000568357 CCDC191Q8NCU4 936 aa19.27■□□□□ 0.68
VPS39-210ENST00000568357 JARID2Q92833 1246 aaPredicted RBP19.27■□□□□ 0.68
VPS39-210ENST00000568357 ANKRD36CQ5JPF3 1778 aa19.27■□□□□ 0.67
VPS39-210ENST00000568357 IRS4O14654 1257 aaPredicted RBP19.26■□□□□ 0.67
VPS39-210ENST00000568357 CDCA7LQ96GN5 454 aa19.26■□□□□ 0.67
VPS39-210ENST00000568357 CWC25Q9NXE8 425 aaPredicted RBP19.26■□□□□ 0.67
VPS39-210ENST00000568357 ABCC4O15439 1325 aa19.25■□□□□ 0.67
VPS39-210ENST00000568357 PPEF1O14829 653 aaPredicted RBP19.25■□□□□ 0.67
VPS39-210ENST00000568357 FKBP4Q02790 459 aaKnown RBP eCLIP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 159.5 ms