RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	GPC2	Q8N158	579 aa		15.19	■□□□□ 0.02
TCF4-238	ENST00000568169	PSMD1	Q99460	953 aa		15.19	■□□□□ 0.02
TCF4-238	ENST00000568169	LTBP1	Q14766	1721 aa		15.19	■□□□□ 0.02
TCF4-238	ENST00000568169	COL4A5	P29400	1685 aa		15.19	■□□□□ 0.02
TCF4-238	ENST00000568169	GTF2E1	P29083	439 aa	Predicted RBP	15.18	■□□□□ 0.02
TCF4-238	ENST00000568169	DEFB115	Q30KQ5	88 aa		15.18	■□□□□ 0.02
TCF4-238	ENST00000568169	MAP1S	Q66K74	1059 aa	Predicted RBP	15.18	■□□□□ 0.02
TCF4-238	ENST00000568169	CC2D2B	Q6DHV5	1058 aa		15.18	■□□□□ 0.02
TCF4-238	ENST00000568169	ABCC12	Q96J65	1359 aa		15.17	■□□□□ 0.02
TCF4-238	ENST00000568169	ERVV-1	B6SEH8	477 aa		15.17	■□□□□ 0.02
TCF4-238	ENST00000568169	LBX1	P52954	281 aa		15.17	■□□□□ 0.02
TCF4-238	ENST00000568169	JDP2	Q8WYK2	163 aa		15.17	■□□□□ 0.02
TCF4-238	ENST00000568169	PPP2R1A	P30153	589 aa		15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	HOXA10	P31260	410 aa	Predicted RBP	15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	NUTM1	Q86Y26	1132 aa		15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	NYX	Q9GZU5	481 aa		15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	MIS18A	Q9NYP9	233 aa		15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	RIC1	Q4ADV7	1423 aa		15.16	■□□□□ 0.02
TCF4-238	ENST00000568169	THSD7B	Q9C0I4	1608 aa		15.15	■□□□□ 0.02
TCF4-238	ENST00000568169	EIF6	P56537	245 aa	Known RBP	15.15	■□□□□ 0.02
TCF4-238	ENST00000568169	MAP3K15	Q6ZN16	1313 aa		15.15	■□□□□ 0.02
TCF4-238	ENST00000568169	WDR33	Q9C0J8	1336 aa	Known RBP	15.15	■□□□□ 0.02
TCF4-238	ENST00000568169	IBTK	Q9P2D0	1353 aa	Predicted RBP	15.14	■□□□□ 0.01
TCF4-238	ENST00000568169	HSPA8	P11142	646 aa	Known RBP	15.14	■□□□□ 0.01
TCF4-238	ENST00000568169	MAP2K1	Q02750	393 aa	Predicted RBP	15.14	■□□□□ 0.01
TCF4-238	ENST00000568169	GRIPAP1	Q4V328	841 aa		15.14	■□□□□ 0.01
TCF4-238	ENST00000568169	DDX21	Q9NR30	783 aa	Known RBP eCLIP	15.14	■□□□□ 0.01
TCF4-238	ENST00000568169	TTLL7	Q6ZT98	887 aa		15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	NGEF	Q8N5V2	710 aa		15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	RPGR	Q92834	1020 aa	Known RBP	15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	CRAMP1	Q96RY5	1269 aa		15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	ABT1	Q9ULW3	272 aa	Known RBP	15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	GJA3	Q9Y6H8	435 aa		15.13	■□□□□ 0.01
TCF4-238	ENST00000568169	LMOD1	P29536	600 aa	Predicted RBP	15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	EPS15	P42566	896 aa		15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	SCNN1D	P51172	638 aa		15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	LARGE2	Q8N3Y3	721 aa		15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	PNISR	Q8TF01	805 aa	Known RBP	15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	UBN2	Q6ZU65	1347 aa		15.12	■□□□□ 0.01
TCF4-238	ENST00000568169	LAMB2	P55268	1798 aa		15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	GPT	P24298	496 aa		15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	EIF4A1	P60842	406 aa	Known RBP	15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	FMR1	Q06787	632 aa	Known RBP eCLIP	15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	SUSD4	Q5VX71	490 aa		15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	KIF6	Q6ZMV9	814 aa		15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	ZNF34	Q8IZ26	560 aa		15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	RRP7A	Q9Y3A4	280 aa	Known RBP	15.11	■□□□□ 0.01
TCF4-238	ENST00000568169	USP50	Q70EL3	339 aa	Predicted RBP	15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	SLC51A	Q86UW1	340 aa		15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	ABHD8	Q96I13	439 aa		15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	RBM17	Q96I25	401 aa	Known RBP	15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	CAPNS2	Q96L46	248 aa		15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	CASP8AP2	Q9UKL3	1982 aa		15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	ANKRD36C	Q5JPF3	1778 aa		15.1	■□□□□ 0.01
TCF4-238	ENST00000568169	PPEF1	O14829	653 aa	Predicted RBP	15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	NTSR2	O95665	410 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	MYL6B	P14649	208 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	ECE1	P42892	770 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	CST9	Q5W186	159 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	GIGYF2	Q6Y7W6	1299 aa	Known RBP	15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	NIM1K	Q8IY84	436 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	ZBTB3	Q9H5J0	574 aa		15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	POLR2A	P24928	1970 aa	Known RBP	15.09	■□□□□ 0.01
TCF4-238	ENST00000568169	TAF1	P21675	1872 aa		15.08	■□□□□ 0.01
TCF4-238	ENST00000568169	C3orf67	Q6ZVT6	689 aa		15.08	■□□□□ 0
TCF4-238	ENST00000568169	VPS33B	Q9H267	617 aa		15.08	■□□□□ 0
TCF4-238	ENST00000568169	ERBB4	Q15303	1308 aa		15.08	■□□□□ 0
TCF4-238	ENST00000568169	TRAF5	O00463	557 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	TCERG1	O14776	1098 aa	Known RBP	15.07	■□□□□ 0
TCF4-238	ENST00000568169	NEFM	P07197	916 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	SLC10A5	Q5PT55	438 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	GPR101	Q96P66	508 aa	Predicted RBP	15.07	■□□□□ 0
TCF4-238	ENST00000568169	PLEKHF1	Q96S99	279 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	THUMPD2	Q9BTF0	503 aa	Known RBP	15.07	■□□□□ 0
TCF4-238	ENST00000568169	GPRC5D	Q9NZD1	345 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	ATP6V0A2	Q9Y487	856 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	TLL2	Q9Y6L7	1015 aa		15.07	■□□□□ 0
TCF4-238	ENST00000568169	PPIP5K2	O43314	1243 aa		15.06	■□□□□ 0
TCF4-238	ENST00000568169	PARP10	Q53GL7	1025 aa		15.06	■□□□□ 0
TCF4-238	ENST00000568169	CYP4F22	Q6NT55	531 aa		15.06	■□□□□ 0
TCF4-238	ENST00000568169	PPP1R42	Q7Z4L9	355 aa		15.06	■□□□□ 0
TCF4-238	ENST00000568169	NLRP3	Q96P20	1036 aa		15.06	■□□□□ 0
TCF4-238	ENST00000568169	CXCL9	Q07325	125 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	NFE2L2	Q16236	605 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	AOC3	Q16853	763 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	15.05	■□□□□ -0
TCF4-238	ENST00000568169	LRP10	Q7Z4F1	713 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	BEGAIN	Q9BUH8	593 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	RTFDC1	Q9BY42	306 aa	Predicted RBP	15.05	■□□□□ -0
TCF4-238	ENST00000568169	ADARB2	Q9NS39	739 aa	Known RBP	15.05	■□□□□ -0
TCF4-238	ENST00000568169	ZNRF3	Q9ULT6	936 aa		15.05	■□□□□ -0
TCF4-238	ENST00000568169	MAP2K2	P36507	400 aa		15.04	■□□□□ -0
TCF4-238	ENST00000568169	PDIA6	Q15084	440 aa		15.04	■□□□□ -0
TCF4-238	ENST00000568169	SUPT20H	Q8NEM7	779 aa		15.04	■□□□□ -0
TCF4-238	ENST00000568169	TMX4	Q9H1E5	349 aa	Predicted RBP	15.04	■□□□□ -0
TCF4-238	ENST00000568169	GRM1	Q13255	1194 aa		15.03	■□□□□ -0
TCF4-238	ENST00000568169	SAPCD2	Q86UD0	394 aa		15.03	■□□□□ -0
TCF4-238	ENST00000568169	UTP14A	Q9BVJ6	771 aa	Known RBP	15.03	■□□□□ -0
TCF4-238	ENST00000568169	PGAP2	Q9UHJ9	254 aa		15.03	■□□□□ -0
TCF4-238	ENST00000568169	ABCC4	O15439	1325 aa		15.02	■□□□□ -0

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms