RNA–Protein interactions for RNA: ENST00000568153.1

CAPN3-218, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-218ENST00000568153 USP17L1Q7RTZ2 530 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 TXNDC2Q86VQ3 553 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 KDF1Q8NAX2 398 aaPredicted RBP8.33□□□□□ -1.08
CAPN3-218ENST00000568153 AGBL1Q96MI9 1066 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 PUS7Q96PZ0 661 aaKnown RBP8.33□□□□□ -1.08
CAPN3-218ENST00000568153 POGKQ9P215 609 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 SERPINA10Q9UK55 444 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 KIF1BO60333 1816 aa8.33□□□□□ -1.08
CAPN3-218ENST00000568153 RIMS2Q9UQ26 1411 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 SOBPA7XYQ1 873 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 SPINT1O43278 529 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 ADH1AP07327 375 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 NFX1Q12986 1120 aaKnown RBP8.32□□□□□ -1.08
CAPN3-218ENST00000568153 PLEKHM2Q8IWE5 1019 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 DISP3Q9P2K9 1392 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 MADDQ8WXG6 1647 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 A2ML1A8K2U0 1454 aa8.32□□□□□ -1.08
CAPN3-218ENST00000568153 SPATA31D1Q6ZQQ2 1576 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 CFAP65Q6ZU64 1925 aaKnown RBP8.31□□□□□ -1.08
CAPN3-218ENST00000568153 LMOD1P29536 600 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-218ENST00000568153 CNGB1Q14028 1251 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-218ENST00000568153 EML3Q32P44 896 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 SIRT1Q96EB6 747 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 OSBPL3Q9H4L5 887 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 KNSTRNQ9Y448 316 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 PIK3C2BO00750 1634 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 LAMC1P11047 1609 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 SIGLEC1Q9BZZ2 1709 aa8.31□□□□□ -1.08
CAPN3-218ENST00000568153 CLTCQ00610 1675 aaKnown RBP8.3□□□□□ -1.08
CAPN3-218ENST00000568153 EVC2Q86UK5 1308 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 LZTS3O60299 673 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-218ENST00000568153 RELBQ01201 579 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 USP4Q13107 963 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 TREML4Q6UXN2 200 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 DNMT3LQ9UJW3 386 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 TMEM2Q9UHN6 1383 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 PREX1Q8TCU6 1659 aa8.3□□□□□ -1.08
CAPN3-218ENST00000568153 TERTO14746 1132 aaKnown RBP8.29□□□□□ -1.08
CAPN3-218ENST00000568153 MYCP01106 439 aaPredicted RBP8.29□□□□□ -1.08
CAPN3-218ENST00000568153 RFX1P22670 979 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 LTKP29376 864 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 LCE2CQ5TA81 110 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 PRAM1Q96QH2 718 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 MRS2Q9HD23 443 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 KTN1Q86UP2 1357 aaKnown RBP8.29□□□□□ -1.08
CAPN3-218ENST00000568153 NLRP1Q9C000 1473 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 TMEM131LA2VDJ0 1609 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 NEXMIFQ5QGS0 1516 aa8.29□□□□□ -1.08
CAPN3-218ENST00000568153 SBNO2Q9Y2G9 1366 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 TTLL8A6PVC2 850 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 MAN1A2O60476 641 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 SAFB2Q14151 953 aaKnown RBP eCLIP8.28□□□□□ -1.08
CAPN3-218ENST00000568153 TMC1Q8TDI8 760 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 ARID3AQ99856 593 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 NXF1Q9UBU9 619 aaKnown RBP8.28□□□□□ -1.08
CAPN3-218ENST00000568153 NOD1Q9Y239 953 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 TBX22Q9Y458 520 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 KIAA1210Q9ULL0 1709 aa8.28□□□□□ -1.08
CAPN3-218ENST00000568153 SETBP1Q9Y6X0 1596 aa8.27□□□□□ -1.09
CAPN3-218ENST00000568153 ABCC11Q96J66 1382 aa8.27□□□□□ -1.09
CAPN3-218ENST00000568153 PTGIRP43119 386 aa8.27□□□□□ -1.09
CAPN3-218ENST00000568153 CTSOP43234 321 aaPredicted RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 CC2D1BQ5T0F9 858 aaKnown RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 ANKLE2Q86XL3 938 aa8.27□□□□□ -1.09
CAPN3-218ENST00000568153 INSM2Q96T92 566 aaPredicted RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 ZNF395Q9H8N7 513 aaPredicted RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 MKRN1Q9UHC7 482 aaKnown RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 PCDHGA11Q9Y5H2 935 aa8.27□□□□□ -1.09
CAPN3-218ENST00000568153 YTHDC2Q9H6S0 1430 aaKnown RBP8.27□□□□□ -1.09
CAPN3-218ENST00000568153 LRPPRCP42704 1394 aaKnown RBP8.26□□□□□ -1.09
CAPN3-218ENST00000568153 ATP5J2-PTCD1G3V325 749 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 WFS1O76024 890 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 SRPK2P78362 688 aaKnown RBP8.26□□□□□ -1.09
CAPN3-218ENST00000568153 CCDC184Q52MB2 194 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 CYP2U1Q7Z449 544 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 WAPLQ7Z5K2 1190 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 NPAS3Q8IXF0 933 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 FAM9BQ8IZU0 186 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 CDK19Q9BWU1 502 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 SLC12A5Q9H2X9 1139 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 MROH2AA6NES4 1674 aa8.26□□□□□ -1.09
CAPN3-218ENST00000568153 MYBBP1AQ9BQG0 1328 aaKnown RBP8.26□□□□□ -1.09
CAPN3-218ENST00000568153 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.25□□□□□ -1.09
CAPN3-218ENST00000568153 STAU1O95793 577 aaKnown RBP8.25□□□□□ -1.09
CAPN3-218ENST00000568153 GTF2IP78347 998 aa8.25□□□□□ -1.09
CAPN3-218ENST00000568153 CLDN10P78369 228 aa8.25□□□□□ -1.09
CAPN3-218ENST00000568153 SLC26A8Q96RN1 970 aa8.25□□□□□ -1.09
CAPN3-218ENST00000568153 ADGRB1O14514 1584 aa8.25□□□□□ -1.09
CAPN3-218ENST00000568153 PPLO60437 1756 aa8.25□□□□□ -1.09
CAPN3-218ENST00000568153 METP08581 1390 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 PLEKHG1Q9ULL1 1385 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 H3BM21 787 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 FOXD4L5Q5VV16 416 aaPredicted RBP8.24□□□□□ -1.09
CAPN3-218ENST00000568153 NLRP13Q86W25 1043 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 RNF217Q8TC41 542 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 VRTNQ9H8Y1 702 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 RAB6BQ9NRW1 208 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 KIAA1024Q9UPX6 916 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 ALKQ9UM73 1620 aa8.24□□□□□ -1.09
CAPN3-218ENST00000568153 IFT172Q9UG01 1749 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms