RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 PXDNLA1KZ92 1463 aa14.05□□□□□ -0.16
CLN3-224ENST00000566816 SCN7AQ01118 1682 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 COL24A1Q17RW2 1714 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 KLRG2A4D1S0 409 aaPredicted RBP14.04□□□□□ -0.16
CLN3-224ENST00000566816 H7C1W4 665 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 NTSR2O95665 410 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 GPTP24298 496 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 BICDL1Q6ZP65 573 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 HDAC5Q9UQL6 1122 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 CD2APQ9Y5K6 639 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 UTYO14607 1347 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 BCORQ6W2J9 1755 aa14.04□□□□□ -0.16
CLN3-224ENST00000566816 PRR5LQ6MZQ0 368 aa14.03□□□□□ -0.16
CLN3-224ENST00000566816 SLC4A10Q6U841 1118 aa14.03□□□□□ -0.16
CLN3-224ENST00000566816 CNBD1Q8NA66 436 aa14.03□□□□□ -0.16
CLN3-224ENST00000566816 BRIP1Q9BX63 1249 aa14.03□□□□□ -0.16
CLN3-224ENST00000566816 TRMT112Q9UI30 125 aaKnown RBP14.03□□□□□ -0.16
CLN3-224ENST00000566816 SH3TC1Q8TE82 1336 aa14.03□□□□□ -0.16
CLN3-224ENST00000566816 RIC1Q4ADV7 1423 aa14.02□□□□□ -0.16
CLN3-224ENST00000566816 CDHR2Q9BYE9 1310 aa14.02□□□□□ -0.17
CLN3-224ENST00000566816 CENPBP07199 599 aaPredicted RBP14.02□□□□□ -0.17
CLN3-224ENST00000566816 GTF2E1P29083 439 aaPredicted RBP14.02□□□□□ -0.17
CLN3-224ENST00000566816 ST5P78524 1137 aa14.02□□□□□ -0.17
CLN3-224ENST00000566816 CWF19L2Q2TBE0 894 aaKnown RBP14.02□□□□□ -0.17
CLN3-224ENST00000566816 PLA2G12BQ9BX93 195 aa14.02□□□□□ -0.17
CLN3-224ENST00000566816 CHMP4BQ9H444 224 aaKnown RBP14.02□□□□□ -0.17
CLN3-224ENST00000566816 NUP98P52948 1817 aa14.01□□□□□ -0.17
CLN3-224ENST00000566816 GRM8O00222 908 aa14.01□□□□□ -0.17
CLN3-224ENST00000566816 RRP1P56182 461 aaKnown RBP14.01□□□□□ -0.17
CLN3-224ENST00000566816 TGFB2P61812 414 aa14.01□□□□□ -0.17
CLN3-224ENST00000566816 FTSJ3Q8IY81 847 aaKnown RBP14.01□□□□□ -0.17
CLN3-224ENST00000566816 USP44Q9H0E7 712 aa14.01□□□□□ -0.17
CLN3-224ENST00000566816 PDE6BP35913 854 aa14□□□□□ -0.17
CLN3-224ENST00000566816 CASP7P55210 303 aa14□□□□□ -0.17
CLN3-224ENST00000566816 C9orf78Q9NZ63 289 aaPredicted RBP14□□□□□ -0.17
CLN3-224ENST00000566816 GNAI3P08754 354 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 SF3B3Q15393 1217 aaKnown RBP13.99□□□□□ -0.17
CLN3-224ENST00000566816 ERFEQ4G0M1 354 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 TMEM57Q8N5G2 664 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 CLUAP1Q96AJ1 413 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 FAM89AQ96GI7 184 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 NLRP3Q96P20 1036 aa13.99□□□□□ -0.17
CLN3-224ENST00000566816 IRS4O14654 1257 aaPredicted RBP13.98□□□□□ -0.17
CLN3-224ENST00000566816 ZBTB7BO15156 539 aaPredicted RBP13.98□□□□□ -0.17
CLN3-224ENST00000566816 NPHP1O15259 732 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 PDE8AO60658 829 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 RLBP1P12271 317 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 CRY2Q49AN0 593 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 DDX19BQ9UMR2 479 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 ARFGEF2Q9Y6D5 1785 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 NRXN2Q9P2S2 1712 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 C10orf71Q711Q0 1435 aa13.98□□□□□ -0.17
CLN3-224ENST00000566816 PLIN1O60240 522 aa13.97□□□□□ -0.17
CLN3-224ENST00000566816 HOXA10P31260 410 aaPredicted RBP13.97□□□□□ -0.17
CLN3-224ENST00000566816 AAMPQ13685 434 aa13.97□□□□□ -0.17
CLN3-224ENST00000566816 MVPQ14764 893 aaKnown RBP13.97□□□□□ -0.17
CLN3-224ENST00000566816 NUTM1Q86Y26 1132 aa13.97□□□□□ -0.17
CLN3-224ENST00000566816 SRCAPQ6ZRS2 3230 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 FAM177BA6PVY3 158 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 CSF1RP07333 972 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 NBPF7P0C2Y1 421 aaPredicted RBP13.96□□□□□ -0.17
CLN3-224ENST00000566816 UBE3BQ7Z3V4 1068 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 PANK1Q8TE04 598 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 PPP1R1BQ9UD71 204 aaPredicted RBP13.96□□□□□ -0.17
CLN3-224ENST00000566816 TNNQ9UQP3 1299 aa13.96□□□□□ -0.17
CLN3-224ENST00000566816 SUPT16HQ9Y5B9 1047 aaKnown RBP13.96□□□□□ -0.17
CLN3-224ENST00000566816 H0YIN7 160 aa13.95□□□□□ -0.18
CLN3-224ENST00000566816 UBTFL1P0CB47 393 aaPredicted RBP13.95□□□□□ -0.18
CLN3-224ENST00000566816 SRGNP10124 158 aa13.95□□□□□ -0.18
CLN3-224ENST00000566816 SYNE4Q8N205 404 aa13.95□□□□□ -0.18
CLN3-224ENST00000566816 ANKRD36CQ5JPF3 1778 aa13.95□□□□□ -0.18
CLN3-224ENST00000566816 HCLS1P14317 486 aaPredicted RBP13.94□□□□□ -0.18
CLN3-224ENST00000566816 NPR1P16066 1061 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 ALDH1B1P30837 517 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 RABL6Q3YEC7 729 aaPredicted RBP13.94□□□□□ -0.18
CLN3-224ENST00000566816 STYK1Q6J9G0 422 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 ITPRIPQ8IWB1 547 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 TTLL11Q8NHH1 800 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 MASTLQ96GX5 879 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 CRAMP1Q96RY5 1269 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 SYT17Q9BSW7 474 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 RTL9Q8NET4 1388 aa13.94□□□□□ -0.18
CLN3-224ENST00000566816 GNAI2P04899 355 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 CTSWP56202 376 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 FOXO4P98177 505 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 CCDC152Q4G0S7 254 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 C20orf194Q5TEA3 1177 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 KAZALD1Q96I82 304 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 MEIS3Q99687 375 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 FHDC1Q9C0D6 1143 aaPredicted RBP13.93□□□□□ -0.18
CLN3-224ENST00000566816 ZBTB40Q9NUA8 1239 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 ABCC12Q96J65 1359 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 LRP5O75197 1615 aa13.93□□□□□ -0.18
CLN3-224ENST00000566816 BBOX1O75936 387 aa13.92□□□□□ -0.18
CLN3-224ENST00000566816 KCNA3P22001 575 aa13.92□□□□□ -0.18
CLN3-224ENST00000566816 MTX1Q13505 466 aa13.92□□□□□ -0.18
CLN3-224ENST00000566816 C2CD5Q86YS7 1000 aa13.92□□□□□ -0.18
CLN3-224ENST00000566816 CNKSR1Q969H4 720 aa13.92□□□□□ -0.18
CLN3-224ENST00000566816 RBM17Q96I25 401 aaKnown RBP13.92□□□□□ -0.18
CLN3-224ENST00000566816 COG6Q9Y2V7 657 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms