RNA–Protein interactions for RNA: ENST00000566095.6

SF3B3-207, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 453 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-207ENST00000566095 NPHP1O15259 732 aa12.22□□□□□ -0.45
SF3B3-207ENST00000566095 KCNQ4P56696 695 aa12.22□□□□□ -0.45
SF3B3-207ENST00000566095 EN1Q05925 392 aaPredicted RBP12.22□□□□□ -0.45
SF3B3-207ENST00000566095 ZNF34Q8IZ26 560 aa12.22□□□□□ -0.45
SF3B3-207ENST00000566095 ANKRD44Q8N8A2 993 aa12.22□□□□□ -0.45
SF3B3-207ENST00000566095 ARHGEF1Q92888 912 aaKnown RBP12.22□□□□□ -0.45
SF3B3-207ENST00000566095 UTP14AQ9BVJ6 771 aaKnown RBP12.22□□□□□ -0.45
SF3B3-207ENST00000566095 TRMT112Q9UI30 125 aaKnown RBP12.22□□□□□ -0.45
SF3B3-207ENST00000566095 H7C1W4 665 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 GTF2E1P29083 439 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-207ENST00000566095 USPL1Q5W0Q7 1092 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 CEP85Q6P2H3 762 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 UBE3BQ7Z3V4 1068 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 NLRP10Q86W26 655 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 AKT1S1Q96B36 256 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 PCDHB15Q9Y5E8 787 aa12.21□□□□□ -0.45
SF3B3-207ENST00000566095 LRRFIP2Q9Y608 721 aaKnown RBP12.21□□□□□ -0.45
SF3B3-207ENST00000566095 CARMIL3Q8ND23 1372 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 SH3TC1Q8TE82 1336 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 MSH5O43196 834 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 GPTP24298 496 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 ATP8B2P98198 1209 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 MTX1Q13505 466 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 HLFQ16534 295 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 TPTE2Q6XPS3 522 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 PROM2Q8N271 834 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 NLGN1Q8N2Q7 840 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 UBR3Q6ZT12 1888 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 NUP98P52948 1817 aa12.2□□□□□ -0.46
SF3B3-207ENST00000566095 EIF5BO60841 1220 aaKnown RBP12.19□□□□□ -0.46
SF3B3-207ENST00000566095 NBPF7P0C2Y1 421 aaPredicted RBP12.19□□□□□ -0.46
SF3B3-207ENST00000566095 EZH2Q15910 746 aaKnown RBP12.19□□□□□ -0.46
SF3B3-207ENST00000566095 SLC15A2Q16348 729 aa12.19□□□□□ -0.46
SF3B3-207ENST00000566095 ERC1Q8IUD2 1116 aa12.19□□□□□ -0.46
SF3B3-207ENST00000566095 PLA2G12BQ9BX93 195 aa12.19□□□□□ -0.46
SF3B3-207ENST00000566095 C1orf115Q9H7X2 142 aa12.19□□□□□ -0.46
SF3B3-207ENST00000566095 SRGAP3O43295 1099 aa12.18□□□□□ -0.46
SF3B3-207ENST00000566095 PDE8AO60658 829 aa12.18□□□□□ -0.46
SF3B3-207ENST00000566095 RAB11FIP3O75154 756 aa12.18□□□□□ -0.46
SF3B3-207ENST00000566095 ST5P78524 1137 aa12.18□□□□□ -0.46
SF3B3-207ENST00000566095 NBPF5PQ86XG9 351 aaPredicted RBP12.18□□□□□ -0.46
SF3B3-207ENST00000566095 EP400Q96L91 3159 aa12.18□□□□□ -0.46
SF3B3-207ENST00000566095 QSER1Q2KHR3 1735 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 IRS4O14654 1257 aaPredicted RBP12.17□□□□□ -0.46
SF3B3-207ENST00000566095 IGHDP01880 384 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 SLC16A10Q8TF71 515 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 FBXO3Q9UK99 471 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 C4AP0C0L4 1744 aa12.17□□□□□ -0.46
SF3B3-207ENST00000566095 OS9Q13438 667 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-207ENST00000566095 ZNF827Q17R98 1081 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 CCDC57Q2TAC2 916 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 RABL6Q3YEC7 729 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-207ENST00000566095 CCDC152Q4G0S7 254 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 TAF7LQ5H9L4 462 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 SSH3Q8TE77 659 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 BICC1Q9H694 974 aaKnown RBP12.16□□□□□ -0.46
SF3B3-207ENST00000566095 DCTPP1Q9H773 170 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 CHMP3Q9Y3E7 222 aa12.16□□□□□ -0.46
SF3B3-207ENST00000566095 UBN2Q6ZU65 1347 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 NTSR2O95665 410 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 GYS1P13807 737 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 CASP7P55210 303 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 G3BP1Q13283 466 aaKnown RBP eCLIP12.15□□□□□ -0.465e-9■□□□□ 9.9
SF3B3-207ENST00000566095 SUSD4Q5VX71 490 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 TBC1D9BQ66K14 1250 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 BICDL1Q6ZP65 573 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 CNBD1Q8NA66 436 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 FAM89AQ96GI7 184 aa12.15□□□□□ -0.46
SF3B3-207ENST00000566095 SRP68Q9UHB9 627 aaKnown RBP12.15□□□□□ -0.46
SF3B3-207ENST00000566095 CTSWP56202 376 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 NUCB1Q02818 461 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 IFIT5Q13325 482 aaKnown RBP12.14□□□□□ -0.47
SF3B3-207ENST00000566095 POLA2Q14181 598 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 LMBR1LQ6UX01 489 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 DEFB132Q7Z7B7 95 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 KIF1BPQ96EK5 621 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 NLRP3Q96P20 1036 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 PDZRN3Q9UPQ7 1066 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 PARP3Q9Y6F1 533 aa12.14□□□□□ -0.47
SF3B3-207ENST00000566095 PNPLA7Q6ZV29 1317 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 RIC1Q4ADV7 1423 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 ANKRD18BA2A2Z9 1011 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 SURF6O75683 361 aaKnown RBP12.13□□□□□ -0.47
SF3B3-207ENST00000566095 SLC10A5Q5PT55 438 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 COL23A1Q86Y22 540 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-207ENST00000566095 UPF1Q92900 1129 aaKnown RBP eCLIP12.13□□□□□ -0.47
SF3B3-207ENST00000566095 CDC5LQ99459 802 aaKnown RBP12.13□□□□□ -0.47
SF3B3-207ENST00000566095 LRRCC1Q9C099 1032 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 BCL2L12Q9HB09 334 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 COL24A1Q17RW2 1714 aa12.13□□□□□ -0.47
SF3B3-207ENST00000566095 FAM177BA6PVY3 158 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 CSF1RP07333 972 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 NFIXQ14938 502 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 RTL5Q5HYW3 569 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-207ENST00000566095 TSHZ2Q9NRE2 1034 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 NOP58Q9Y2X3 529 aaKnown RBP12.12□□□□□ -0.47
SF3B3-207ENST00000566095 RTL9Q8NET4 1388 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 LAMB2P55268 1798 aa12.12□□□□□ -0.47
SF3B3-207ENST00000566095 PNMA6EA0A0J9YXQ4 647 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms