RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 TSPYL6Q8N831 410 aa23.82■■□□□ 1.4
CLN3-221ENST00000566057 PLBD2Q8NHP8 589 aa23.82■■□□□ 1.4
CLN3-221ENST00000566057 UTP14AQ9BVJ6 771 aaKnown RBP23.82■■□□□ 1.4
CLN3-221ENST00000566057 NMRK2Q9NPI5 230 aa23.82■■□□□ 1.4
CLN3-221ENST00000566057 LAMB2P55268 1798 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 NCBP3Q53F19 620 aaKnown RBP23.81■■□□□ 1.4
CLN3-221ENST00000566057 HSP90AB3PQ58FF7 597 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 OLFM4Q6UX06 510 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 ANKRD13DQ6ZTN6 518 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 C3orf67Q6ZVT6 689 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 SALL2Q9Y467 1007 aaPredicted RBP23.81■■□□□ 1.4
CLN3-221ENST00000566057 RIC1Q4ADV7 1423 aa23.81■■□□□ 1.4
CLN3-221ENST00000566057 ALDH1B1P30837 517 aa23.8■■□□□ 1.4
CLN3-221ENST00000566057 FAM9BQ8IZU0 186 aa23.8■■□□□ 1.4
CLN3-221ENST00000566057 SYNE4Q8N205 404 aa23.8■■□□□ 1.4
CLN3-221ENST00000566057 SLC10A5Q5PT55 438 aa23.79■■□□□ 1.4
CLN3-221ENST00000566057 SOGA3Q5TF21 947 aa23.79■■□□□ 1.4
CLN3-221ENST00000566057 ZNF428Q96B54 188 aa23.79■■□□□ 1.4
CLN3-221ENST00000566057 PHAXQ9H814 394 aaKnown RBP23.79■■□□□ 1.4
CLN3-221ENST00000566057 LTBP3Q9NS15 1303 aa23.79■■□□□ 1.4
CLN3-221ENST00000566057 HOXA10P31260 410 aaPredicted RBP23.78■■□□□ 1.4
CLN3-221ENST00000566057 TAOK3Q9H2K8 898 aa23.78■■□□□ 1.4
CLN3-221ENST00000566057 IL16Q14005 1332 aa23.77■■□□□ 1.4
CLN3-221ENST00000566057 ZC3H4Q9UPT8 1303 aaKnown RBP23.77■■□□□ 1.4
CLN3-221ENST00000566057 CCDC93Q567U6 631 aa23.76■■□□□ 1.39
CLN3-221ENST00000566057 RPGRQ92834 1020 aaKnown RBP23.76■■□□□ 1.39
CLN3-221ENST00000566057 ISCA1Q9BUE6 129 aa23.76■■□□□ 1.39
CLN3-221ENST00000566057 TRMT112Q9UI30 125 aaKnown RBP23.76■■□□□ 1.39
CLN3-221ENST00000566057 TAF1P21675 1872 aa23.76■■□□□ 1.39
CLN3-221ENST00000566057 KDM2BQ8NHM5 1336 aa23.76■■□□□ 1.39
CLN3-221ENST00000566057 ATP5J2-PTCD1G3V325 749 aa23.75■■□□□ 1.39
CLN3-221ENST00000566057 HCLS1P14317 486 aaPredicted RBP23.75■■□□□ 1.39
CLN3-221ENST00000566057 NLRP3Q96P20 1036 aa23.75■■□□□ 1.39
CLN3-221ENST00000566057 RNF123Q5XPI4 1314 aa23.75■■□□□ 1.39
CLN3-221ENST00000566057 DDX60Q8IY21 1712 aaKnown RBP23.75■■□□□ 1.39
CLN3-221ENST00000566057 CCDC30Q5VVM6 783 aa23.74■■□□□ 1.39
CLN3-221ENST00000566057 SLC51AQ86UW1 340 aa23.74■■□□□ 1.39
CLN3-221ENST00000566057 RBM17Q96I25 401 aaKnown RBP23.74■■□□□ 1.39
CLN3-221ENST00000566057 CRAMP1Q96RY5 1269 aa23.74■■□□□ 1.39
CLN3-221ENST00000566057 RRAGCQ9HB90 399 aa23.74■■□□□ 1.39
CLN3-221ENST00000566057 GLTPD2A6NH11 291 aa23.73■■□□□ 1.39
CLN3-221ENST00000566057 WDR63Q8IWG1 891 aa23.73■■□□□ 1.39
CLN3-221ENST00000566057 CEP350Q5VT06 3117 aa23.73■■□□□ 1.39
CLN3-221ENST00000566057 TCERG1O14776 1098 aaKnown RBP23.72■■□□□ 1.39
CLN3-221ENST00000566057 FKBP4Q02790 459 aaKnown RBP eCLIP23.72■■□□□ 1.39
CLN3-221ENST00000566057 TWISTNBQ3B726 338 aaPredicted RBP23.72■■□□□ 1.39
CLN3-221ENST00000566057 RIC3Q7Z5B4 369 aa23.72■■□□□ 1.39
CLN3-221ENST00000566057 SH3TC1Q8TE82 1336 aa23.72■■□□□ 1.39
CLN3-221ENST00000566057 SNED1Q8TER0 1413 aa23.72■■□□□ 1.39
CLN3-221ENST00000566057 FANCIQ9NVI1 1328 aa23.71■■□□□ 1.39
CLN3-221ENST00000566057 GOLGA2Q08379 1002 aa23.71■■□□□ 1.39
CLN3-221ENST00000566057 RTKN2Q8IZC4 609 aa23.71■■□□□ 1.39
CLN3-221ENST00000566057 ZNF277Q9NRM2 450 aaPredicted RBP23.71■■□□□ 1.39
CLN3-221ENST00000566057 TOMM70O94826 608 aa23.7■■□□□ 1.38
CLN3-221ENST00000566057 TRIM28Q13263 835 aaKnown RBP23.7■■□□□ 1.38
CLN3-221ENST00000566057 FAM89AQ96GI7 184 aa23.7■■□□□ 1.38
CLN3-221ENST00000566057 CHMP4AQ9BY43 222 aa23.7■■□□□ 1.38
CLN3-221ENST00000566057 SPINK5Q9NQ38 1064 aaPredicted RBP23.7■■□□□ 1.38
CLN3-221ENST00000566057 CACNA1FO60840 1977 aa23.7■■□□□ 1.38
CLN3-221ENST00000566057 ABCC4O15439 1325 aa23.67■■□□□ 1.38
CLN3-221ENST00000566057 PPEF1O14829 653 aaPredicted RBP23.67■■□□□ 1.38
CLN3-221ENST00000566057 RTL5Q5HYW3 569 aaPredicted RBP23.67■■□□□ 1.38
CLN3-221ENST00000566057 MYD88Q99836 296 aa23.67■■□□□ 1.38
CLN3-221ENST00000566057 WDR90Q96KV7 1748 aa23.67■■□□□ 1.38
CLN3-221ENST00000566057 POTECB2RU33 542 aa23.66■■□□□ 1.38
CLN3-221ENST00000566057 CC2D2BQ6DHV5 1058 aa23.66■■□□□ 1.38
CLN3-221ENST00000566057 DPY19L2Q6NUT2 758 aa23.66■■□□□ 1.38
CLN3-221ENST00000566057 G2E3Q7L622 706 aa23.66■■□□□ 1.38
CLN3-221ENST00000566057 PSMD1Q99460 953 aa23.66■■□□□ 1.38
CLN3-221ENST00000566057 SLC4A2P04920 1241 aa23.65■■□□□ 1.38
CLN3-221ENST00000566057 EXOSC9Q06265 439 aaKnown RBP23.65■■□□□ 1.38
CLN3-221ENST00000566057 C16orf71Q8IYS4 520 aaPredicted RBP23.65■■□□□ 1.38
CLN3-221ENST00000566057 METTL22Q9BUU2 404 aaPredicted RBP23.65■■□□□ 1.38
CLN3-221ENST00000566057 STK31Q9BXU1 1019 aa23.65■■□□□ 1.38
CLN3-221ENST00000566057 VAMP4O75379 141 aa23.64■■□□□ 1.37
CLN3-221ENST00000566057 DDX58O95786 925 aaKnown RBP23.64■■□□□ 1.37
CLN3-221ENST00000566057 IARSP41252 1262 aaKnown RBP23.64■■□□□ 1.37
CLN3-221ENST00000566057 MAP3K2Q9Y2U5 619 aa23.64■■□□□ 1.37
CLN3-221ENST00000566057 ATP6V0A2Q9Y487 856 aa23.64■■□□□ 1.37
CLN3-221ENST00000566057 PI4KAP2A4QPH2 592 aa23.63■■□□□ 1.37
CLN3-221ENST00000566057 DDNO94850 711 aaPredicted RBP23.63■■□□□ 1.37
CLN3-221ENST00000566057 VEGFAP15692 232 aaPredicted RBP23.63■■□□□ 1.37
CLN3-221ENST00000566057 HSPA6P17066 643 aa23.63■■□□□ 1.37
CLN3-221ENST00000566057 KSR2Q6VAB6 950 aa23.63■■□□□ 1.37
CLN3-221ENST00000566057 DDX46Q7L014 1031 aaKnown RBP23.63■■□□□ 1.37
CLN3-221ENST00000566057 PI4KAP1Q8N8J0 262 aa23.63■■□□□ 1.37
CLN3-221ENST00000566057 RBM46Q8TBY0 533 aaKnown RBP23.63■■□□□ 1.37
CLN3-221ENST00000566057 COL4A5P29400 1685 aa23.63■■□□□ 1.37
CLN3-221ENST00000566057 IRS4O14654 1257 aaPredicted RBP23.62■■□□□ 1.37
CLN3-221ENST00000566057 BBOX1O75936 387 aa23.62■■□□□ 1.37
CLN3-221ENST00000566057 ZBTB38Q8NAP3 1195 aaPredicted RBP23.62■■□□□ 1.37
CLN3-221ENST00000566057 CCDC191Q8NCU4 936 aa23.62■■□□□ 1.37
CLN3-221ENST00000566057 JARID2Q92833 1246 aaPredicted RBP23.62■■□□□ 1.37
CLN3-221ENST00000566057 COL4A1P02462 1669 aa23.62■■□□□ 1.37
CLN3-221ENST00000566057 GRAPQ13588 217 aa23.61■■□□□ 1.37
CLN3-221ENST00000566057 SF3B3Q15393 1217 aaKnown RBP23.61■■□□□ 1.37
CLN3-221ENST00000566057 GRIPAP1Q4V328 841 aa23.61■■□□□ 1.37
CLN3-221ENST00000566057 GRAPLQ8TC17 118 aaPredicted RBP23.61■■□□□ 1.37
CLN3-221ENST00000566057 ZNF521Q96K83 1311 aa23.6■■□□□ 1.37
CLN3-221ENST00000566057 SP8Q8IXZ3 490 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms