RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 FAM177BA6PVY3 158 aa22.2■■□□□ 1.14
USB1-209ENST00000564387 NPHP1O15259 732 aa22.2■■□□□ 1.14
USB1-209ENST00000564387 ADCY9O60503 1353 aa22.2■■□□□ 1.14
USB1-209ENST00000564387 FLIIQ13045 1269 aa22.19■■□□□ 1.14
USB1-209ENST00000564387 CRY2Q49AN0 593 aa22.19■■□□□ 1.14
USB1-209ENST00000564387 DALRD3Q5D0E6 543 aaKnown RBP22.19■■□□□ 1.14
USB1-209ENST00000564387 NUTM1Q86Y26 1132 aa22.19■■□□□ 1.14
USB1-209ENST00000564387 PELP1Q8IZL8 1130 aaKnown RBP22.19■■□□□ 1.14
USB1-209ENST00000564387 METTL22Q9BUU2 404 aaPredicted RBP22.19■■□□□ 1.14
USB1-209ENST00000564387 PI4KAP2A4QPH2 592 aa22.18■■□□□ 1.14
USB1-209ENST00000564387 STYK1Q6J9G0 422 aa22.18■■□□□ 1.14
USB1-209ENST00000564387 PI4KAP1Q8N8J0 262 aa22.18■■□□□ 1.14
USB1-209ENST00000564387 BCS1LQ9Y276 419 aa22.18■■□□□ 1.14
USB1-209ENST00000564387 TNRC6CQ9HCJ0 1690 aaKnown RBP22.17■■□□□ 1.14
USB1-209ENST00000564387 CT47B1P0C2W7 299 aaPredicted RBP22.17■■□□□ 1.14
USB1-209ENST00000564387 GTF2E1P29083 439 aaPredicted RBP22.17■■□□□ 1.14
USB1-209ENST00000564387 HNRNPUQ00839 825 aaKnown RBP eCLIP22.17■■□□□ 1.14
USB1-209ENST00000564387 TTLL6Q8N841 843 aa22.17■■□□□ 1.14
USB1-209ENST00000564387 MASTLQ96GX5 879 aa22.17■■□□□ 1.14
USB1-209ENST00000564387 WWC3Q9ULE0 1092 aa22.17■■□□□ 1.14
USB1-209ENST00000564387 MAP3K2Q9Y2U5 619 aa22.17■■□□□ 1.14
USB1-209ENST00000564387 ATP5J2-PTCD1G3V325 749 aa22.16■■□□□ 1.14
USB1-209ENST00000564387 CCDC191Q8NCU4 936 aa22.16■■□□□ 1.14
USB1-209ENST00000564387 CHD4Q14839 1912 aa22.16■■□□□ 1.14
USB1-209ENST00000564387 NPR1P16066 1061 aa22.15■■□□□ 1.14
USB1-209ENST00000564387 TRMT112Q9UI30 125 aaKnown RBP22.15■■□□□ 1.14
USB1-209ENST00000564387 SH3TC1Q8TE82 1336 aa22.14■■□□□ 1.14
USB1-209ENST00000564387 HOXA10P31260 410 aaPredicted RBP22.14■■□□□ 1.13
USB1-209ENST00000564387 CNKSR1Q969H4 720 aa22.14■■□□□ 1.13
USB1-209ENST00000564387 MYD88Q99836 296 aa22.14■■□□□ 1.13
USB1-209ENST00000564387 ZBED9Q6R2W3 1325 aa22.13■■□□□ 1.13
USB1-209ENST00000564387 IGKV5-2P06315 115 aa22.13■■□□□ 1.13
USB1-209ENST00000564387 SYNE4Q8N205 404 aa22.13■■□□□ 1.13
USB1-209ENST00000564387 FKBP5Q13451 457 aaPredicted RBP22.12■■□□□ 1.13
USB1-209ENST00000564387 ALDH1L2Q3SY69 923 aa22.12■■□□□ 1.13
USB1-209ENST00000564387 MRPL50Q8N5N7 158 aaKnown RBP22.12■■□□□ 1.13
USB1-209ENST00000564387 ZBTB38Q8NAP3 1195 aaPredicted RBP22.12■■□□□ 1.13
USB1-209ENST00000564387 ZNF622Q969S3 477 aaKnown RBP eCLIP22.12■■□□□ 1.13
USB1-209ENST00000564387 C3orf67Q6ZVT6 689 aa22.11■■□□□ 1.13
USB1-209ENST00000564387 C7orf43Q8WVR3 580 aa22.11■■□□□ 1.13
USB1-209ENST00000564387 SSH1Q8WYL5 1049 aa22.11■■□□□ 1.13
USB1-209ENST00000564387 NLRP3Q96P20 1036 aa22.11■■□□□ 1.13
USB1-209ENST00000564387 SLX4Q8IY92 1834 aa22.1■■□□□ 1.13
USB1-209ENST00000564387 PCCAP05165 728 aaPredicted RBP22.1■■□□□ 1.13
USB1-209ENST00000564387 BRPF1P55201 1214 aaPredicted RBP22.1■■□□□ 1.13
USB1-209ENST00000564387 DDX60Q8IY21 1712 aaKnown RBP22.1■■□□□ 1.13
USB1-209ENST00000564387 DNAAF4Q8WXU2 420 aa22.1■■□□□ 1.13
USB1-209ENST00000564387 FAM89AQ96GI7 184 aa22.1■■□□□ 1.13
USB1-209ENST00000564387 CWC25Q9NXE8 425 aaPredicted RBP22.1■■□□□ 1.13
USB1-209ENST00000564387 NEURL1BA8MQ27 555 aa22.09■■□□□ 1.13
USB1-209ENST00000564387 ALDH1B1P30837 517 aa22.09■■□□□ 1.13
USB1-209ENST00000564387 NEXNQ0ZGT2 675 aa22.09■■□□□ 1.13
USB1-209ENST00000564387 PRPF40BQ6NWY9 871 aaKnown RBP22.09■■□□□ 1.13
USB1-209ENST00000564387 CRAMP1Q96RY5 1269 aa22.09■■□□□ 1.13
USB1-209ENST00000564387 LAMB2P55268 1798 aa22.09■■□□□ 1.13
USB1-209ENST00000564387 HCLS1P14317 486 aaPredicted RBP22.08■■□□□ 1.13
USB1-209ENST00000564387 LINS1Q8NG48 757 aa22.08■■□□□ 1.13
USB1-209ENST00000564387 SF3B3Q15393 1217 aaKnown RBP22.07■■□□□ 1.12
USB1-209ENST00000564387 ARHGAP27Q6ZUM4 889 aa22.07■■□□□ 1.12
USB1-209ENST00000564387 CDHR2Q9BYE9 1310 aa22.06■■□□□ 1.12
USB1-209ENST00000564387 CWF19L2Q2TBE0 894 aaKnown RBP22.06■■□□□ 1.12
USB1-209ENST00000564387 BEND3Q5T5X7 828 aa22.06■■□□□ 1.12
USB1-209ENST00000564387 PTPRCP08575 1304 aa22.06■■□□□ 1.12
USB1-209ENST00000564387 F6X3S4 739 aa22.05■■□□□ 1.12
USB1-209ENST00000564387 H7C1W4 665 aa22.05■■□□□ 1.12
USB1-209ENST00000564387 IRS4O14654 1257 aaPredicted RBP22.05■■□□□ 1.12
USB1-209ENST00000564387 YY1P25490 414 aa22.05■■□□□ 1.12
USB1-209ENST00000564387 GCKRQ14397 625 aa22.05■■□□□ 1.12
USB1-209ENST00000564387 RPGRQ92834 1020 aaKnown RBP22.05■■□□□ 1.12
USB1-209ENST00000564387 FER1L6Q2WGJ9 1857 aa22.05■■□□□ 1.12
USB1-209ENST00000564387 C21orf2O43822 256 aa22.04■■□□□ 1.12
USB1-209ENST00000564387 HSP90B1P14625 803 aaKnown RBP22.04■■□□□ 1.12
USB1-209ENST00000564387 RARSP54136 660 aaKnown RBP22.04■■□□□ 1.12
USB1-209ENST00000564387 SOGA3Q5TF21 947 aa22.04■■□□□ 1.12
USB1-209ENST00000564387 RBM17Q96I25 401 aaKnown RBP22.04■■□□□ 1.12
USB1-209ENST00000564387 SNED1Q8TER0 1413 aa22.04■■□□□ 1.12
USB1-209ENST00000564387 CACNA1SQ13698 1873 aa22.03■■□□□ 1.12
USB1-209ENST00000564387 CASP7P55210 303 aa22.03■■□□□ 1.12
USB1-209ENST00000564387 LTBP3Q9NS15 1303 aa22.03■■□□□ 1.12
USB1-209ENST00000564387 NFKBIEO00221 500 aa22.02■■□□□ 1.12
USB1-209ENST00000564387 SBF1O95248 1867 aa22.02■■□□□ 1.12
USB1-209ENST00000564387 PDE8AO60658 829 aa22.01■■□□□ 1.11
USB1-209ENST00000564387 RTL5Q5HYW3 569 aaPredicted RBP22.01■■□□□ 1.11
USB1-209ENST00000564387 SMC4Q9NTJ3 1288 aa22.01■■□□□ 1.11
USB1-209ENST00000564387 ABCC4O15439 1325 aa22.01■■□□□ 1.11
USB1-209ENST00000564387 ALDH1L1O75891 902 aa22■■□□□ 1.11
USB1-209ENST00000564387 PRELPP51888 382 aa22■■□□□ 1.11
USB1-209ENST00000564387 CC2D2BQ6DHV5 1058 aa22■■□□□ 1.11
USB1-209ENST00000564387 PLA2G12BQ9BX93 195 aa22■■□□□ 1.11
USB1-209ENST00000564387 BCL2L13Q9BXK5 485 aa22■■□□□ 1.11
USB1-209ENST00000564387 BBOX1O75936 387 aa21.99■■□□□ 1.11
USB1-209ENST00000564387 GRAPQ13588 217 aa21.98■■□□□ 1.11
USB1-209ENST00000564387 GRIPAP1Q4V328 841 aa21.98■■□□□ 1.11
USB1-209ENST00000564387 CCDC93Q567U6 631 aa21.98■■□□□ 1.11
USB1-209ENST00000564387 DDX46Q7L014 1031 aaKnown RBP21.98■■□□□ 1.11
USB1-209ENST00000564387 GRAPLQ8TC17 118 aaPredicted RBP21.98■■□□□ 1.11
USB1-209ENST00000564387 JARID2Q92833 1246 aaPredicted RBP21.98■■□□□ 1.11
USB1-209ENST00000564387 LMNB1P20700 586 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 RASSF7Q02833 373 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 UBE3BQ7Z3V4 1068 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms