RNA–Protein interactions for RNA: ENST00000563952.1

CMTM4-204, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-204ENST00000563952 PHAXQ9H814 394 aaKnown RBP39.68■■■■□ 3.94
CMTM4-204ENST00000563952 NFKBIEO00221 500 aa39.67■■■■□ 3.94
CMTM4-204ENST00000563952 CHMP4AQ9BY43 222 aa39.67■■■■□ 3.94
CMTM4-204ENST00000563952 RIC1Q4ADV7 1423 aa39.66■■■■□ 3.94
CMTM4-204ENST00000563952 CRY2Q49AN0 593 aa39.65■■■■□ 3.94
CMTM4-204ENST00000563952 FANCIQ9NVI1 1328 aa39.65■■■■□ 3.94
CMTM4-204ENST00000563952 LMNB1P20700 586 aa39.64■■■■□ 3.94
CMTM4-204ENST00000563952 GOLGA2Q08379 1002 aa39.64■■■■□ 3.94
CMTM4-204ENST00000563952 TWISTNBQ3B726 338 aaPredicted RBP39.64■■■■□ 3.94
CMTM4-204ENST00000563952 RPGRQ92834 1020 aaKnown RBP39.64■■■■□ 3.94
CMTM4-204ENST00000563952 ZNF428Q96B54 188 aa39.64■■■■□ 3.94
CMTM4-204ENST00000563952 FER1L6Q2WGJ9 1857 aa39.63■■■■□ 3.93
CMTM4-204ENST00000563952 PRELPP51888 382 aa39.63■■■■□ 3.93
CMTM4-204ENST00000563952 CCDC88AQ3V6T2 1871 aa39.62■■■■□ 3.93
CMTM4-204ENST00000563952 ALDH1B1P30837 517 aa39.62■■■■□ 3.93
CMTM4-204ENST00000563952 SOGA3Q5TF21 947 aa39.62■■■■□ 3.93
CMTM4-204ENST00000563952 RIC3Q7Z5B4 369 aa39.62■■■■□ 3.93
CMTM4-204ENST00000563952 TRMT112Q9UI30 125 aaKnown RBP39.62■■■■□ 3.93
CMTM4-204ENST00000563952 ATP5J2-PTCD1G3V325 749 aa39.61■■■■□ 3.93
CMTM4-204ENST00000563952 TCERG1O14776 1098 aaKnown RBP39.61■■■■□ 3.93
CMTM4-204ENST00000563952 C3orf67Q6ZVT6 689 aa39.61■■■■□ 3.93
CMTM4-204ENST00000563952 RNF123Q5XPI4 1314 aa39.61■■■■□ 3.93
CMTM4-204ENST00000563952 C7orf43Q8WVR3 580 aa39.59■■■■□ 3.93
CMTM4-204ENST00000563952 NLRP3Q96P20 1036 aa39.59■■■■□ 3.93
CMTM4-204ENST00000563952 STK31Q9BXU1 1019 aa39.59■■■■□ 3.93
CMTM4-204ENST00000563952 SLC10A5Q5PT55 438 aa39.58■■■■□ 3.93
CMTM4-204ENST00000563952 SYNE4Q8N205 404 aa39.58■■■■□ 3.93
CMTM4-204ENST00000563952 ISCA1Q9BUE6 129 aa39.58■■■■□ 3.93
CMTM4-204ENST00000563952 TAOK3Q9H2K8 898 aa39.58■■■■□ 3.93
CMTM4-204ENST00000563952 SH3TC1Q8TE82 1336 aa39.57■■■■□ 3.92
CMTM4-204ENST00000563952 CCDC93Q567U6 631 aa39.56■■■■□ 3.92
CMTM4-204ENST00000563952 OLFM4Q6UX06 510 aa39.56■■■■□ 3.92
CMTM4-204ENST00000563952 RBM17Q96I25 401 aaKnown RBP39.56■■■■□ 3.92
CMTM4-204ENST00000563952 SPINK5Q9NQ38 1064 aaPredicted RBP39.56■■■■□ 3.92
CMTM4-204ENST00000563952 HCLS1P14317 486 aaPredicted RBP39.55■■■■□ 3.92
CMTM4-204ENST00000563952 HOXA10P31260 410 aaPredicted RBP39.55■■■■□ 3.92
CMTM4-204ENST00000563952 TIAM2Q8IVF5 1701 aa39.54■■■■□ 3.92
CMTM4-204ENST00000563952 C1QTNF8P60827 252 aa39.54■■■■□ 3.92
CMTM4-204ENST00000563952 DDX58O95786 925 aaKnown RBP39.53■■■■□ 3.92
CMTM4-204ENST00000563952 EXOSC9Q06265 439 aaKnown RBP39.53■■■■□ 3.92
CMTM4-204ENST00000563952 LTBP3Q9NS15 1303 aa39.53■■■■□ 3.92
CMTM4-204ENST00000563952 LAMB2P55268 1798 aa39.52■■■■□ 3.92
CMTM4-204ENST00000563952 MYH16Q9H6N6 1097 aa39.52■■■■□ 3.92
CMTM4-204ENST00000563952 CRAMP1Q96RY5 1269 aa39.51■■■■□ 3.92
CMTM4-204ENST00000563952 MYD88Q99836 296 aa39.51■■■■□ 3.92
CMTM4-204ENST00000563952 ZC3H4Q9UPT8 1303 aaKnown RBP39.5■■■■□ 3.91
CMTM4-204ENST00000563952 FAM89AQ96GI7 184 aa39.5■■■■□ 3.91
CMTM4-204ENST00000563952 CCER2I3L3R5 266 aa39.49■■■■□ 3.91
CMTM4-204ENST00000563952 NMRK2Q9NPI5 230 aa39.49■■■■□ 3.91
CMTM4-204ENST00000563952 KDM2BQ8NHM5 1336 aa39.48■■■■□ 3.91
CMTM4-204ENST00000563952 SLC4A2P04920 1241 aa39.48■■■■□ 3.91
CMTM4-204ENST00000563952 TRIM28Q13263 835 aaKnown RBP39.48■■■■□ 3.91
CMTM4-204ENST00000563952 RTL5Q5HYW3 569 aaPredicted RBP39.48■■■■□ 3.91
CMTM4-204ENST00000563952 RTKN2Q8IZC4 609 aa39.47■■■■□ 3.91
CMTM4-204ENST00000563952 MAP3K2Q9Y2U5 619 aa39.47■■■■□ 3.91
CMTM4-204ENST00000563952 DICER1Q9UPY3 1922 aaKnown RBP39.47■■■■□ 3.91
CMTM4-204ENST00000563952 DDX60Q8IY21 1712 aaKnown RBP39.46■■■■□ 3.91
CMTM4-204ENST00000563952 KIF3CO14782 793 aa39.46■■■■□ 3.91
CMTM4-204ENST00000563952 PPEF1O14829 653 aaPredicted RBP39.46■■■■□ 3.91
CMTM4-204ENST00000563952 VAMP4O75379 141 aa39.46■■■■□ 3.91
CMTM4-204ENST00000563952 FKBP4Q02790 459 aaKnown RBP eCLIP39.45■■■■□ 3.91
CMTM4-204ENST00000563952 G2E3Q7L622 706 aa39.45■■■■□ 3.91
CMTM4-204ENST00000563952 METTL22Q9BUU2 404 aaPredicted RBP39.45■■■■□ 3.91
CMTM4-204ENST00000563952 ZNF521Q96K83 1311 aa39.44■■■■□ 3.9
CMTM4-204ENST00000563952 KSR2Q6VAB6 950 aa39.44■■■■□ 3.9
CMTM4-204ENST00000563952 ABCC4O15439 1325 aa39.43■■■■□ 3.9
CMTM4-204ENST00000563952 PI4KAP2A4QPH2 592 aa39.43■■■■□ 3.9
CMTM4-204ENST00000563952 PI4KAP1Q8N8J0 262 aa39.43■■■■□ 3.9
CMTM4-204ENST00000563952 ZNF277Q9NRM2 450 aaPredicted RBP39.42■■■■□ 3.9
CMTM4-204ENST00000563952 SLC51AQ86UW1 340 aa39.41■■■■□ 3.9
CMTM4-204ENST00000563952 CC2D2BQ6DHV5 1058 aa39.4■■■■□ 3.9
CMTM4-204ENST00000563952 DDX46Q7L014 1031 aaKnown RBP39.4■■■■□ 3.9
CMTM4-204ENST00000563952 CCDC191Q8NCU4 936 aa39.4■■■■□ 3.9
CMTM4-204ENST00000563952 GLTPD2A6NH11 291 aa39.39■■■■□ 3.9
CMTM4-204ENST00000563952 IRS4O14654 1257 aaPredicted RBP39.39■■■■□ 3.9
CMTM4-204ENST00000563952 ZBTB38Q8NAP3 1195 aaPredicted RBP39.39■■■■□ 3.9
CMTM4-204ENST00000563952 CWC25Q9NXE8 425 aaPredicted RBP39.39■■■■□ 3.9
CMTM4-204ENST00000563952 FLIIQ13045 1269 aa39.38■■■■□ 3.89
CMTM4-204ENST00000563952 RRAGCQ9HB90 399 aa39.38■■■■□ 3.89
CMTM4-204ENST00000563952 CACNA1FO60840 1977 aa39.37■■■■□ 3.89
CMTM4-204ENST00000563952 TMX4Q9H1E5 349 aaPredicted RBP39.37■■■■□ 3.89
CMTM4-204ENST00000563952 SNED1Q8TER0 1413 aa39.37■■■■□ 3.89
CMTM4-204ENST00000563952 NEXNQ0ZGT2 675 aa39.36■■■■□ 3.89
CMTM4-204ENST00000563952 TAF1P21675 1872 aa39.35■■■■□ 3.89
CMTM4-204ENST00000563952 DIEXFQ68CQ4 756 aaKnown RBP39.35■■■■□ 3.89
CMTM4-204ENST00000563952 DPY19L2Q6NUT2 758 aa39.35■■■■□ 3.89
CMTM4-204ENST00000563952 JARID2Q92833 1246 aaPredicted RBP39.35■■■■□ 3.89
CMTM4-204ENST00000563952 FKBP5Q13451 457 aaPredicted RBP39.34■■■■□ 3.89
CMTM4-204ENST00000563952 PSMD1Q99460 953 aa39.34■■■■□ 3.89
CMTM4-204ENST00000563952 ATP6V0A2Q9Y487 856 aa39.34■■■■□ 3.89
CMTM4-204ENST00000563952 BBOX1O75936 387 aa39.33■■■■□ 3.89
CMTM4-204ENST00000563952 PCCAP05165 728 aaPredicted RBP39.33■■■■□ 3.89
CMTM4-204ENST00000563952 IGKV5-2P06315 115 aa39.33■■■■□ 3.89
CMTM4-204ENST00000563952 GRAPQ13588 217 aa39.33■■■■□ 3.89
CMTM4-204ENST00000563952 GRAPLQ8TC17 118 aaPredicted RBP39.33■■■■□ 3.89
CMTM4-204ENST00000563952 IARSP41252 1262 aaKnown RBP39.32■■■■□ 3.89
CMTM4-204ENST00000563952 SF3B3Q15393 1217 aaKnown RBP39.32■■■■□ 3.89
CMTM4-204ENST00000563952 GRIPAP1Q4V328 841 aa39.32■■■■□ 3.89
CMTM4-204ENST00000563952 C16orf71Q8IYS4 520 aaPredicted RBP39.32■■■■□ 3.89
CMTM4-204ENST00000563952 HSP90B1P14625 803 aaKnown RBP39.29■■■■□ 3.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms