RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 HOXB7P09629 217 aa13.4□□□□□ -0.26
CLK3-205ENST00000561673 PARP10Q53GL7 1025 aa13.4□□□□□ -0.26
CLK3-205ENST00000561673 HDGFL1Q5TGJ6 251 aa13.4□□□□□ -0.26
CLK3-205ENST00000561673 IBTKQ9P2D0 1353 aaPredicted RBP13.4□□□□□ -0.26
CLK3-205ENST00000561673 NUP98P52948 1817 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
CLK3-205ENST00000561673 POTECB2RU33 542 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 VEGFAP15692 232 aaPredicted RBP13.39□□□□□ -0.27
CLK3-205ENST00000561673 HOXA10P31260 410 aaPredicted RBP13.39□□□□□ -0.27
CLK3-205ENST00000561673 DUSP27Q5VZP5 1158 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 DPY19L2Q6NUT2 758 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 C3orf67Q6ZVT6 689 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 RTKN2Q8IZC4 609 aa13.39□□□□□ -0.27
CLK3-205ENST00000561673 UTP14AQ9BVJ6 771 aaKnown RBP13.39□□□□□ -0.27
CLK3-205ENST00000561673 FER1L6Q2WGJ9 1857 aa13.38□□□□□ -0.27
CLK3-205ENST00000561673 FKBP4Q02790 459 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLK3-205ENST00000561673 FSTL1Q12841 308 aa13.38□□□□□ -0.27
CLK3-205ENST00000561673 TCIRG1Q13488 830 aa13.38□□□□□ -0.27
CLK3-205ENST00000561673 SLC10A5Q5PT55 438 aa13.38□□□□□ -0.27
CLK3-205ENST00000561673 RPGRQ92834 1020 aaKnown RBP13.38□□□□□ -0.27
CLK3-205ENST00000561673 ZNF277Q9NRM2 450 aaPredicted RBP13.38□□□□□ -0.27
CLK3-205ENST00000561673 IFT57Q9NWB7 429 aa13.38□□□□□ -0.27
CLK3-205ENST00000561673 APLP1P51693 650 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 GNAI1P63096 354 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 CALD1Q05682 793 aaKnown RBP13.37□□□□□ -0.27
CLK3-205ENST00000561673 HSP90AB3PQ58FF7 597 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 NLRP10Q86W26 655 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 SYNE4Q8N205 404 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 RBM17Q96I25 401 aaKnown RBP13.37□□□□□ -0.27
CLK3-205ENST00000561673 NLRP3Q96P20 1036 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 DBF4Q9UBU7 674 aaPredicted RBP13.37□□□□□ -0.27
CLK3-205ENST00000561673 RIC1Q4ADV7 1423 aa13.37□□□□□ -0.27
CLK3-205ENST00000561673 TNRC6CQ9HCJ0 1690 aaKnown RBP13.37□□□□□ -0.27
CLK3-205ENST00000561673 ELL2O00472 640 aaPredicted RBP13.36□□□□□ -0.27
CLK3-205ENST00000561673 DDNO94850 711 aaPredicted RBP13.36□□□□□ -0.27
CLK3-205ENST00000561673 ANKRD13DQ6ZTN6 518 aa13.36□□□□□ -0.27
CLK3-205ENST00000561673 PLBD2Q8NHP8 589 aa13.36□□□□□ -0.27
CLK3-205ENST00000561673 CRAMP1Q96RY5 1269 aa13.36□□□□□ -0.27
CLK3-205ENST00000561673 ARFGEF2Q9Y6D5 1785 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 HCLS1P14317 486 aaPredicted RBP13.35□□□□□ -0.27
CLK3-205ENST00000561673 SLC51AQ86UW1 340 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 C8orf58Q8NAV2 365 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 SMC1BQ8NDV3 1235 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 ZNF428Q96B54 188 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 HYPKQ9NX55 129 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 TRMT112Q9UI30 125 aaKnown RBP13.35□□□□□ -0.27
CLK3-205ENST00000561673 CCDC88AQ3V6T2 1871 aa13.35□□□□□ -0.27
CLK3-205ENST00000561673 CACNA1SQ13698 1873 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 TIAM2Q8IVF5 1701 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 TCERG1O14776 1098 aaKnown RBP13.34□□□□□ -0.27
CLK3-205ENST00000561673 ANP32CO43423 234 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 IARSP41252 1262 aaKnown RBP13.34□□□□□ -0.27
CLK3-205ENST00000561673 CC2D2BQ6DHV5 1058 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 DNAJC5GQ8N7S2 189 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 PSMD1Q99460 953 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 RNF123Q5XPI4 1314 aa13.34□□□□□ -0.27
CLK3-205ENST00000561673 SNED1Q8TER0 1413 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 ATP5J2-PTCD1G3V325 749 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 PPEF1O14829 653 aaPredicted RBP13.33□□□□□ -0.28
CLK3-205ENST00000561673 MYCNP04198 464 aaPredicted RBP13.33□□□□□ -0.28
CLK3-205ENST00000561673 ISCA1Q9BUE6 129 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 MRS2Q9HD23 443 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 PCNTO95613 3336 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 SH3TC1Q8TE82 1336 aa13.33□□□□□ -0.28
CLK3-205ENST00000561673 FZD9O00144 591 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 HTRA3P83110 453 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 CCDC27Q2M243 656 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 GRIPAP1Q4V328 841 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 WWC1Q8IX03 1113 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 TSPYL6Q8N831 410 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 PHAXQ9H814 394 aaKnown RBP13.32□□□□□ -0.28
CLK3-205ENST00000561673 ABCC4O15439 1325 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 ZNF541Q9H0D2 1346 aa13.32□□□□□ -0.28
CLK3-205ENST00000561673 DICER1Q9UPY3 1922 aaKnown RBP13.31□□□□□ -0.28
CLK3-205ENST00000561673 WDR90Q96KV7 1748 aa13.31□□□□□ -0.28
CLK3-205ENST00000561673 TSR2Q969E8 191 aaKnown RBP13.31□□□□□ -0.28
CLK3-205ENST00000561673 FAM89AQ96GI7 184 aa13.31□□□□□ -0.28
CLK3-205ENST00000561673 L3MBTL3Q96JM7 780 aaPredicted RBP13.31□□□□□ -0.28
CLK3-205ENST00000561673 ATP6V0A2Q9Y487 856 aa13.31□□□□□ -0.28
CLK3-205ENST00000561673 BBOX1O75936 387 aa13.3□□□□□ -0.28
CLK3-205ENST00000561673 TRIM28Q13263 835 aaKnown RBP13.3□□□□□ -0.28
CLK3-205ENST00000561673 DDX46Q7L014 1031 aaKnown RBP13.3□□□□□ -0.28
CLK3-205ENST00000561673 RIC3Q7Z5B4 369 aa13.3□□□□□ -0.28
CLK3-205ENST00000561673 JDP2Q8WYK2 163 aa13.3□□□□□ -0.28
CLK3-205ENST00000561673 IQCA1LA6NCM1 817 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 POTEIP0CG38 1075 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 GOLGA2Q08379 1002 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 CCDC30Q5VVM6 783 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 SP8Q8IXZ3 490 aa13.29□□□□□ -0.28
CLK3-205ENST00000561673 TMX4Q9H1E5 349 aaPredicted RBP13.29□□□□□ -0.28
CLK3-205ENST00000561673 GRAPQ13588 217 aa13.28□□□□□ -0.28
CLK3-205ENST00000561673 RTL5Q5HYW3 569 aaPredicted RBP13.28□□□□□ -0.28
CLK3-205ENST00000561673 LARGE2Q8N3Y3 721 aa13.28□□□□□ -0.28
CLK3-205ENST00000561673 GRAPLQ8TC17 118 aaPredicted RBP13.28□□□□□ -0.28
CLK3-205ENST00000561673 CHMP4AQ9BY43 222 aa13.28□□□□□ -0.28
CLK3-205ENST00000561673 TAF1DQ9H5J8 278 aaPredicted RBP13.28□□□□□ -0.28
CLK3-205ENST00000561673 SF3B3Q15393 1217 aaKnown RBP13.27□□□□□ -0.29
CLK3-205ENST00000561673 CHADLQ6NUI6 762 aa13.27□□□□□ -0.29
CLK3-205ENST00000561673 GPC2Q8N158 579 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms