RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CHPF2Q9P2E5 772 aa13.33□□□□□ -0.28
LDLR-214ENST00000560628 NUP98P52948 1817 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 FER1L6Q2WGJ9 1857 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 HOXA10P31260 410 aaPredicted RBP13.32□□□□□ -0.28
LDLR-214ENST00000560628 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 SLC51AQ86UW1 340 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 RBM17Q96I25 401 aaKnown RBP13.32□□□□□ -0.28
LDLR-214ENST00000560628 CFAP44Q96MT7 982 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 NLRP3Q96P20 1036 aa13.32□□□□□ -0.28
LDLR-214ENST00000560628 CACNA1SQ13698 1873 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 TCIRG1Q13488 830 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 DUSP27Q5VZP5 1158 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 NLRP10Q86W26 655 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 CRAMP1Q96RY5 1269 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 MBIPQ9NS73 344 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 CEP350Q5VT06 3117 aa13.31□□□□□ -0.28
LDLR-214ENST00000560628 ELL2O00472 640 aaPredicted RBP13.3□□□□□ -0.28
LDLR-214ENST00000560628 HCLS1P14317 486 aaPredicted RBP13.3□□□□□ -0.28
LDLR-214ENST00000560628 IARSP41252 1262 aaKnown RBP13.3□□□□□ -0.28
LDLR-214ENST00000560628 HSP90AB3PQ58FF7 597 aa13.3□□□□□ -0.28
LDLR-214ENST00000560628 SLC10A5Q5PT55 438 aa13.3□□□□□ -0.28
LDLR-214ENST00000560628 IBTKQ9P2D0 1353 aaPredicted RBP13.3□□□□□ -0.28
LDLR-214ENST00000560628 TNRC6CQ9HCJ0 1690 aaKnown RBP13.29□□□□□ -0.28
LDLR-214ENST00000560628 PPEF1O14829 653 aaPredicted RBP13.29□□□□□ -0.28
LDLR-214ENST00000560628 POTEIP0CG38 1075 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 CC2D2BQ6DHV5 1058 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 ANKRD13DQ6ZTN6 518 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 DBF4Q9UBU7 674 aaPredicted RBP13.29□□□□□ -0.28
LDLR-214ENST00000560628 TRMT112Q9UI30 125 aaKnown RBP13.29□□□□□ -0.28
LDLR-214ENST00000560628 TIAM2Q8IVF5 1701 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 ZNF541Q9H0D2 1346 aa13.29□□□□□ -0.28
LDLR-214ENST00000560628 ATP5J2-PTCD1G3V325 749 aa13.28□□□□□ -0.28
LDLR-214ENST00000560628 HOXB7P09629 217 aa13.28□□□□□ -0.28
LDLR-214ENST00000560628 ZNF853P0CG23 659 aa13.28□□□□□ -0.28
LDLR-214ENST00000560628 PLBD2Q8NHP8 589 aa13.28□□□□□ -0.28
LDLR-214ENST00000560628 PSMD1Q99460 953 aa13.28□□□□□ -0.28
LDLR-214ENST00000560628 ZEB1P37275 1124 aaPredicted RBP13.27□□□□□ -0.29
LDLR-214ENST00000560628 GNAI1P63096 354 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 JDP2Q8WYK2 163 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 KLRG1Q96E93 195 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 IFT57Q9NWB7 429 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 HYPKQ9NX55 129 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 ARFGEF2Q9Y6D5 1785 aa13.27□□□□□ -0.29
LDLR-214ENST00000560628 DICER1Q9UPY3 1922 aaKnown RBP13.27□□□□□ -0.29
LDLR-214ENST00000560628 IQCA1LA6NCM1 817 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 FZD9O00144 591 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 ABCC4O15439 1325 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 CALD1Q05682 793 aaKnown RBP13.26□□□□□ -0.29
LDLR-214ENST00000560628 RIC1Q4ADV7 1423 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 CHADLQ6NUI6 762 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 LARGE2Q8N3Y3 721 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 C8orf58Q8NAV2 365 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 SH3TC1Q8TE82 1336 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 L3MBTL3Q96JM7 780 aaPredicted RBP13.26□□□□□ -0.29
LDLR-214ENST00000560628 WDR90Q96KV7 1748 aa13.26□□□□□ -0.29
LDLR-214ENST00000560628 TMX4Q9H1E5 349 aaPredicted RBP13.26□□□□□ -0.29
LDLR-214ENST00000560628 TAF1DQ9H5J8 278 aaPredicted RBP13.26□□□□□ -0.29
LDLR-214ENST00000560628 EAPPQ56P03 285 aaPredicted RBP13.25□□□□□ -0.29
LDLR-214ENST00000560628 RTL5Q5HYW3 569 aaPredicted RBP13.25□□□□□ -0.29
LDLR-214ENST00000560628 DDX46Q7L014 1031 aaKnown RBP13.25□□□□□ -0.29
LDLR-214ENST00000560628 FAM89AQ96GI7 184 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 ISCA1Q9BUE6 129 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
LDLR-214ENST00000560628 HACL1Q9UJ83 578 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 CLEC11AQ9Y240 323 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 ATP6V0A2Q9Y487 856 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 GJA3Q9Y6H8 435 aa13.25□□□□□ -0.29
LDLR-214ENST00000560628 SNED1Q8TER0 1413 aa13.24□□□□□ -0.29
LDLR-214ENST00000560628 RNF123Q5XPI4 1314 aa13.24□□□□□ -0.29
LDLR-214ENST00000560628 BBOX1O75936 387 aa13.24□□□□□ -0.29
LDLR-214ENST00000560628 EIF6P56537 245 aaKnown RBP13.24□□□□□ -0.29
LDLR-214ENST00000560628 GRIPAP1Q4V328 841 aa13.24□□□□□ -0.29
LDLR-214ENST00000560628 RIC3Q7Z5B4 369 aa13.24□□□□□ -0.29
LDLR-214ENST00000560628 ZNF316A6NFI3 1004 aaPredicted RBP13.23□□□□□ -0.29
LDLR-214ENST00000560628 PPIP5K2O43314 1243 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 EPHX2P34913 555 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 AOC3Q16853 763 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 LDHDQ86WU2 507 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 SP8Q8IXZ3 490 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 GPC2Q8N158 579 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 TSPYL6Q8N831 410 aa13.23□□□□□ -0.29
LDLR-214ENST00000560628 GOLGA2Q08379 1002 aa13.22□□□□□ -0.29
LDLR-214ENST00000560628 GRAPQ13588 217 aa13.22□□□□□ -0.29
LDLR-214ENST00000560628 DPP8Q6V1X1 898 aaPredicted RBP13.22□□□□□ -0.29
LDLR-214ENST00000560628 NIM1KQ8IY84 436 aa13.22□□□□□ -0.29
LDLR-214ENST00000560628 MPNDQ8N594 471 aa13.22□□□□□ -0.29
LDLR-214ENST00000560628 GRAPLQ8TC17 118 aaPredicted RBP13.22□□□□□ -0.29
LDLR-214ENST00000560628 TSR2Q969E8 191 aaKnown RBP13.22□□□□□ -0.29
LDLR-214ENST00000560628 MRS2Q9HD23 443 aa13.22□□□□□ -0.29
LDLR-214ENST00000560628 ANP32CO43423 234 aa13.21□□□□□ -0.29
LDLR-214ENST00000560628 TRIM28Q13263 835 aaKnown RBP13.21□□□□□ -0.29
LDLR-214ENST00000560628 CCDC30Q5VVM6 783 aa13.21□□□□□ -0.29
LDLR-214ENST00000560628 JMYQ8N9B5 988 aa13.21□□□□□ -0.29
LDLR-214ENST00000560628 JARID2Q92833 1246 aaPredicted RBP13.21□□□□□ -0.29
LDLR-214ENST00000560628 MYD88Q99836 296 aa13.21□□□□□ -0.29
LDLR-214ENST00000560628 SALL2Q9Y467 1007 aaPredicted RBP13.21□□□□□ -0.29
LDLR-214ENST00000560628 COL4A5P29400 1685 aa13.21□□□□□ -0.3
LDLR-214ENST00000560628 IRS4O14654 1257 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms