RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KLHL34Q8N239 644 aa27.69■■■□□ 2.02
SNX1-210ENST00000560260 FRAT1Q92837 279 aaPredicted RBP27.69■■■□□ 2.02
SNX1-210ENST00000560260 UTP14AQ9BVJ6 771 aaKnown RBP27.69■■■□□ 2.02
SNX1-210ENST00000560260 COL11A2P13942 1736 aaPredicted RBP27.69■■■□□ 2.02
SNX1-210ENST00000560260 NEXNQ0ZGT2 675 aa27.68■■■□□ 2.02
SNX1-210ENST00000560260 ERFEQ4G0M1 354 aa27.68■■■□□ 2.02
SNX1-210ENST00000560260 SLC4A10Q6U841 1118 aa27.68■■■□□ 2.02
SNX1-210ENST00000560260 PPP1R42Q7Z4L9 355 aa27.68■■■□□ 2.02
SNX1-210ENST00000560260 LINS1Q8NG48 757 aa27.68■■■□□ 2.02
SNX1-210ENST00000560260 TRIM27P14373 513 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 TPTE2Q6XPS3 522 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 CCDC191Q8NCU4 936 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 NLGN2Q8NFZ4 835 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 ARHGAP45Q92619 1136 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 API5Q9BZZ5 524 aaKnown RBP27.67■■■□□ 2.02
SNX1-210ENST00000560260 NYXQ9GZU5 481 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 CWC25Q9NXE8 425 aaPredicted RBP27.67■■■□□ 2.02
SNX1-210ENST00000560260 DDX60Q8IY21 1712 aaKnown RBP27.67■■■□□ 2.02
SNX1-210ENST00000560260 TRMT112Q9UI30 125 aaKnown RBP27.67■■■□□ 2.02
SNX1-210ENST00000560260 CD2APQ9Y5K6 639 aa27.67■■■□□ 2.02
SNX1-210ENST00000560260 LAMB2P55268 1798 aa27.66■■■□□ 2.02
SNX1-210ENST00000560260 ABCC4O15439 1325 aa27.66■■■□□ 2.02
SNX1-210ENST00000560260 ST5P78524 1137 aa27.66■■■□□ 2.02
SNX1-210ENST00000560260 ATF7IPQ6VMQ6 1270 aa27.66■■■□□ 2.02
SNX1-210ENST00000560260 JARID2Q92833 1246 aaPredicted RBP27.66■■■□□ 2.02
SNX1-210ENST00000560260 RIC1Q4ADV7 1423 aa27.65■■■□□ 2.02
SNX1-210ENST00000560260 FAM89AQ96GI7 184 aa27.65■■■□□ 2.02
SNX1-210ENST00000560260 RNF123Q5XPI4 1314 aa27.64■■■□□ 2.02
SNX1-210ENST00000560260 NPHP1O15259 732 aa27.64■■■□□ 2.01
SNX1-210ENST00000560260 GCKRQ14397 625 aa27.64■■■□□ 2.01
SNX1-210ENST00000560260 ZKSCAN2Q63HK3 967 aa27.64■■■□□ 2.01
SNX1-210ENST00000560260 SYT17Q9BSW7 474 aa27.64■■■□□ 2.01
SNX1-210ENST00000560260 SH3TC1Q8TE82 1336 aa27.63■■■□□ 2.01
SNX1-210ENST00000560260 RTL5Q5HYW3 569 aaPredicted RBP27.63■■■□□ 2.01
SNX1-210ENST00000560260 C3orf67Q6ZVT6 689 aa27.63■■■□□ 2.01
SNX1-210ENST00000560260 SRCIN1Q9C0H9 1055 aa27.63■■■□□ 2.01
SNX1-210ENST00000560260 DLEC1Q9Y238 1755 aa27.62■■■□□ 2.01
SNX1-210ENST00000560260 IPO8O15397 1037 aaKnown RBP27.62■■■□□ 2.01
SNX1-210ENST00000560260 PCCAP05165 728 aaPredicted RBP27.62■■■□□ 2.01
SNX1-210ENST00000560260 GTF2E1P29083 439 aaPredicted RBP27.62■■■□□ 2.01
SNX1-210ENST00000560260 ZBTB38Q8NAP3 1195 aaPredicted RBP27.62■■■□□ 2.01
SNX1-210ENST00000560260 BRIP1Q9BX63 1249 aa27.62■■■□□ 2.01
SNX1-210ENST00000560260 ALDH1L1O75891 902 aa27.61■■■□□ 2.01
SNX1-210ENST00000560260 CLUAP1Q96AJ1 413 aa27.61■■■□□ 2.01
SNX1-210ENST00000560260 HCLS1P14317 486 aaPredicted RBP27.6■■■□□ 2.01
SNX1-210ENST00000560260 CHRNA5P30532 468 aa27.6■■■□□ 2.01
SNX1-210ENST00000560260 CASP7P55210 303 aa27.6■■■□□ 2.01
SNX1-210ENST00000560260 SLC10A5Q5PT55 438 aa27.6■■■□□ 2.01
SNX1-210ENST00000560260 H7C1W4 665 aa27.59■■■□□ 2.01
SNX1-210ENST00000560260 PLIN1O60240 522 aa27.59■■■□□ 2.01
SNX1-210ENST00000560260 RLBP1P12271 317 aa27.59■■■□□ 2.01
SNX1-210ENST00000560260 BRCA1P38398 1863 aaKnown RBP27.59■■■□□ 2.01
SNX1-210ENST00000560260 DPEP1P16444 411 aa27.58■■■□□ 2.01
SNX1-210ENST00000560260 UBE3BQ7Z3V4 1068 aa27.58■■■□□ 2.01
SNX1-210ENST00000560260 CDHR2Q9BYE9 1310 aa27.57■■■□□ 2
SNX1-210ENST00000560260 A0A0G2JLW4 131 aa27.57■■■□□ 2
SNX1-210ENST00000560260 KLRG2A4D1S0 409 aaPredicted RBP27.57■■■□□ 2
SNX1-210ENST00000560260 IRS4O14654 1257 aaPredicted RBP27.57■■■□□ 2
SNX1-210ENST00000560260 KCNA3P22001 575 aa27.57■■■□□ 2
SNX1-210ENST00000560260 TGFB2P61812 414 aa27.57■■■□□ 2
SNX1-210ENST00000560260 CCT4P50991 539 aaKnown RBP27.56■■■□□ 2
SNX1-210ENST00000560260 INTS3Q68E01 1043 aaKnown RBP27.56■■■□□ 2
SNX1-210ENST00000560260 C2CD5Q86YS7 1000 aa27.56■■■□□ 2
SNX1-210ENST00000560260 GRM8O00222 908 aa27.55■■■□□ 2
SNX1-210ENST00000560260 PDE6BP35913 854 aa27.55■■■□□ 2
SNX1-210ENST00000560260 TMEM57Q8N5G2 664 aa27.55■■■□□ 2
SNX1-210ENST00000560260 COL4A1P02462 1669 aa27.53■■■□□ 2
SNX1-210ENST00000560260 CRY2Q49AN0 593 aa27.53■■■□□ 2
SNX1-210ENST00000560260 DZIP1LQ8IYY4 767 aaKnown RBP27.53■■■□□ 2
SNX1-210ENST00000560260 PANK1Q8TE04 598 aa27.53■■■□□ 2
SNX1-210ENST00000560260 UTYO14607 1347 aa27.53■■■□□ 2
SNX1-210ENST00000560260 NBPF7P0C2Y1 421 aaPredicted RBP27.52■■■□□ 2
SNX1-210ENST00000560260 SRGNP10124 158 aa27.52■■■□□ 2
SNX1-210ENST00000560260 USP44Q9H0E7 712 aa27.52■■■□□ 2
SNX1-210ENST00000560260 WWC3Q9ULE0 1092 aa27.52■■■□□ 2
SNX1-210ENST00000560260 GOLGB1Q14789 3259 aaKnown RBP27.51■■□□□ 1.99
SNX1-210ENST00000560260 C20orf194Q5TEA3 1177 aa27.51■■□□□ 1.99
SNX1-210ENST00000560260 MYH3P11055 1940 aa27.51■■□□□ 1.99
SNX1-210ENST00000560260 FTSJ3Q8IY81 847 aaKnown RBP27.5■■□□□ 1.99
SNX1-210ENST00000560260 NLRP3Q96P20 1036 aa27.5■■□□□ 1.99
SNX1-210ENST00000560260 C9orf78Q9NZ63 289 aaPredicted RBP27.5■■□□□ 1.99
SNX1-210ENST00000560260 CACNA1SQ13698 1873 aa27.5■■□□□ 1.99
SNX1-210ENST00000560260 H0YIN7 160 aa27.49■■□□□ 1.99
SNX1-210ENST00000560260 RRP1P56182 461 aaKnown RBP27.49■■□□□ 1.99
SNX1-210ENST00000560260 SUCLG2Q96I99 432 aa27.49■■□□□ 1.99
SNX1-210ENST00000560260 PLA2G12BQ9BX93 195 aa27.49■■□□□ 1.99
SNX1-210ENST00000560260 PDE8AO60658 829 aa27.48■■□□□ 1.99
SNX1-210ENST00000560260 EPHA10Q5JZY3 1008 aa27.48■■□□□ 1.99
SNX1-210ENST00000560260 KAZALD1Q96I82 304 aa27.48■■□□□ 1.99
SNX1-210ENST00000560260 MEIS3Q99687 375 aa27.48■■□□□ 1.99
SNX1-210ENST00000560260 PDZRN3Q9UPQ7 1066 aa27.48■■□□□ 1.99
SNX1-210ENST00000560260 SF3B3Q15393 1217 aaKnown RBP27.47■■□□□ 1.99
SNX1-210ENST00000560260 MASTLQ96GX5 879 aa27.47■■□□□ 1.99
SNX1-210ENST00000560260 TAF1P21675 1872 aa27.47■■□□□ 1.99
SNX1-210ENST00000560260 NPR1P16066 1061 aa27.46■■□□□ 1.99
SNX1-210ENST00000560260 CTSWP56202 376 aa27.46■■□□□ 1.99
SNX1-210ENST00000560260 STYK1Q6J9G0 422 aa27.46■■□□□ 1.99
SNX1-210ENST00000560260 FOXO4P98177 505 aa27.45■■□□□ 1.99
SNX1-210ENST00000560260 ZNF622Q969S3 477 aaKnown RBP eCLIP27.45■■□□□ 1.995e-7■■■■□ 20.8
SNX1-210ENST00000560260 CCDC85AQ96PX6 553 aaPredicted RBP27.45■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms