RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 WDR90Q96KV7 1748 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 TNRC6CQ9HCJ0 1690 aaKnown RBP12.01□□□□□ -0.49
LDLR-211ENST00000560173 KLRG2A4D1S0 409 aaPredicted RBP12.01□□□□□ -0.49
LDLR-211ENST00000560173 DDX58O95786 925 aaKnown RBP12.01□□□□□ -0.49
LDLR-211ENST00000560173 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 ERFEQ4G0M1 354 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 DALRD3Q5D0E6 543 aaKnown RBP12.01□□□□□ -0.49
LDLR-211ENST00000560173 PPP1R42Q7Z4L9 355 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 RIC3Q7Z5B4 369 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 DNAJC5GQ8N7S2 189 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 BCS1LQ9Y276 419 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 RNF123Q5XPI4 1314 aa12.01□□□□□ -0.49
LDLR-211ENST00000560173 KIF3CO14782 793 aa12□□□□□ -0.49
LDLR-211ENST00000560173 SRGNP10124 158 aa12□□□□□ -0.49
LDLR-211ENST00000560173 GTF2E1P29083 439 aaPredicted RBP12□□□□□ -0.49
LDLR-211ENST00000560173 APLP1P51693 650 aa12□□□□□ -0.49
LDLR-211ENST00000560173 HNRNPUQ00839 825 aaKnown RBP eCLIP12□□□□□ -0.49
LDLR-211ENST00000560173 FLIIQ13045 1269 aa12□□□□□ -0.49
LDLR-211ENST00000560173 TRIM28Q13263 835 aaKnown RBP12□□□□□ -0.49
LDLR-211ENST00000560173 UTP14AQ9BVJ6 771 aaKnown RBP12□□□□□ -0.49
LDLR-211ENST00000560173 ATP5J2-PTCD1G3V325 749 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 CRY2Q49AN0 593 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 STYK1Q6J9G0 422 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 KSR2Q6VAB6 950 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 TTLL6Q8N841 843 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 MAP3K2Q9Y2U5 619 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 ARFGEF1Q9Y6D6 1849 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 CACNA1FO60840 1977 aa11.99□□□□□ -0.49
LDLR-211ENST00000560173 SH3TC1Q8TE82 1336 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 PI4KAP2A4QPH2 592 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 CENPBP07199 599 aaPredicted RBP11.98□□□□□ -0.49
LDLR-211ENST00000560173 SLC10A5Q5PT55 438 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 C3orf67Q6ZVT6 689 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 PI4KAP1Q8N8J0 262 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 ZNF622Q969S3 477 aaKnown RBP eCLIP11.98□□□□□ -0.497e-11■■□□□ 12
LDLR-211ENST00000560173 MASTLQ96GX5 879 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 MYD88Q99836 296 aa11.98□□□□□ -0.49
LDLR-211ENST00000560173 METTL22Q9BUU2 404 aaPredicted RBP11.98□□□□□ -0.49
LDLR-211ENST00000560173 TRMT112Q9UI30 125 aaKnown RBP11.98□□□□□ -0.49
LDLR-211ENST00000560173 NPR1P16066 1061 aa11.97□□□□□ -0.49
LDLR-211ENST00000560173 FKBP5Q13451 457 aaPredicted RBP11.97□□□□□ -0.49
LDLR-211ENST00000560173 SYNE4Q8N205 404 aa11.97□□□□□ -0.49
LDLR-211ENST00000560173 CNKSR1Q969H4 720 aa11.97□□□□□ -0.49
LDLR-211ENST00000560173 ZNF428Q96B54 188 aa11.97□□□□□ -0.49
LDLR-211ENST00000560173 ZBED9Q6R2W3 1325 aa11.96□□□□□ -0.49
LDLR-211ENST00000560173 CAPN15O75808 1086 aa11.96□□□□□ -0.49
LDLR-211ENST00000560173 IGKV5-2P06315 115 aa11.96□□□□□ -0.49
LDLR-211ENST00000560173 CT47B1P0C2W7 299 aaPredicted RBP11.96□□□□□ -0.49
LDLR-211ENST00000560173 HCLS1P14317 486 aaPredicted RBP11.96□□□□□ -0.49
LDLR-211ENST00000560173 COL13A1Q5TAT6 717 aaPredicted RBP11.96□□□□□ -0.49
LDLR-211ENST00000560173 CCDC191Q8NCU4 936 aa11.96□□□□□ -0.49
LDLR-211ENST00000560173 PCNTO95613 3336 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 HOXA10P31260 410 aaPredicted RBP11.95□□□□□ -0.5
LDLR-211ENST00000560173 NEXNQ0ZGT2 675 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 PRPF40BQ6NWY9 871 aaKnown RBP11.95□□□□□ -0.5
LDLR-211ENST00000560173 MRPL50Q8N5N7 158 aaKnown RBP11.95□□□□□ -0.5
LDLR-211ENST00000560173 DNAAF4Q8WXU2 420 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 SSH1Q8WYL5 1049 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 FAM89AQ96GI7 184 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 CWC25Q9NXE8 425 aaPredicted RBP11.95□□□□□ -0.5
LDLR-211ENST00000560173 SLX4Q8IY92 1834 aa11.95□□□□□ -0.5
LDLR-211ENST00000560173 ALDH1L2Q3SY69 923 aa11.94□□□□□ -0.5
LDLR-211ENST00000560173 ARHGAP27Q6ZUM4 889 aa11.94□□□□□ -0.5
LDLR-211ENST00000560173 ZBTB38Q8NAP3 1195 aaPredicted RBP11.94□□□□□ -0.5
LDLR-211ENST00000560173 C7orf43Q8WVR3 580 aa11.94□□□□□ -0.5
LDLR-211ENST00000560173 RPGRQ92834 1020 aaKnown RBP11.94□□□□□ -0.5
LDLR-211ENST00000560173 NLRP3Q96P20 1036 aa11.94□□□□□ -0.5
LDLR-211ENST00000560173 LAMB2P55268 1798 aa11.94□□□□□ -0.5
LDLR-211ENST00000560173 DDX60Q8IY21 1712 aaKnown RBP11.94□□□□□ -0.5
LDLR-211ENST00000560173 NEURL1BA8MQ27 555 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 F6X3S4 739 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 IRS4O14654 1257 aaPredicted RBP11.93□□□□□ -0.5
LDLR-211ENST00000560173 C21orf2O43822 256 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 TOMM70O94826 608 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 PCCAP05165 728 aaPredicted RBP11.93□□□□□ -0.5
LDLR-211ENST00000560173 CWF19L2Q2TBE0 894 aaKnown RBP11.93□□□□□ -0.5
LDLR-211ENST00000560173 LINS1Q8NG48 757 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 BCL2L13Q9BXK5 485 aa11.93□□□□□ -0.5
LDLR-211ENST00000560173 CACNA1SQ13698 1873 aa11.92□□□□□ -0.5
LDLR-211ENST00000560173 NFKBIEO00221 500 aa11.92□□□□□ -0.5
LDLR-211ENST00000560173 ALDH1B1P30837 517 aa11.92□□□□□ -0.5
LDLR-211ENST00000560173 RTL5Q5HYW3 569 aaPredicted RBP11.92□□□□□ -0.5
LDLR-211ENST00000560173 RBM17Q96I25 401 aaKnown RBP11.92□□□□□ -0.5
LDLR-211ENST00000560173 CRAMP1Q96RY5 1269 aa11.92□□□□□ -0.5
LDLR-211ENST00000560173 SMC4Q9NTJ3 1288 aa11.92□□□□□ -0.5
LDLR-211ENST00000560173 ZNF219Q9P2Y4 722 aaPredicted RBP11.92□□□□□ -0.5
LDLR-211ENST00000560173 ABCC4O15439 1325 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 PTPRCP08575 1304 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 CDHR2Q9BYE9 1310 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 PRELPP51888 382 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 RASSF7Q02833 373 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 GCKRQ14397 625 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 SF3B3Q15393 1217 aaKnown RBP11.91□□□□□ -0.5
LDLR-211ENST00000560173 BEND3Q5T5X7 828 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 SOGA3Q5TF21 947 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 JARID2Q92833 1246 aaPredicted RBP11.91□□□□□ -0.5
LDLR-211ENST00000560173 SNED1Q8TER0 1413 aa11.91□□□□□ -0.5
LDLR-211ENST00000560173 H7C1W4 665 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 HSP90B1P14625 803 aaKnown RBP11.9□□□□□ -0.5
LDLR-211ENST00000560173 RARSP54136 660 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms