RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 HDGFL1Q5TGJ6 251 aa23.15■■□□□ 1.3
HDDC3-205ENST00000559898 DUSP27Q5VZP5 1158 aa23.15■■□□□ 1.3
HDDC3-205ENST00000559898 ZNF277Q9NRM2 450 aaPredicted RBP23.15■■□□□ 1.3
HDDC3-205ENST00000559898 COL4A5P29400 1685 aa23.14■■□□□ 1.29
HDDC3-205ENST00000559898 CCDC93Q567U6 631 aa23.14■■□□□ 1.29
HDDC3-205ENST00000559898 RBM46Q8TBY0 533 aaKnown RBP23.14■■□□□ 1.29
HDDC3-205ENST00000559898 ELL2O00472 640 aaPredicted RBP23.13■■□□□ 1.29
HDDC3-205ENST00000559898 TCERG1O14776 1098 aaKnown RBP23.13■■□□□ 1.29
HDDC3-205ENST00000559898 DDNO94850 711 aaPredicted RBP23.13■■□□□ 1.29
HDDC3-205ENST00000559898 RIC1Q4ADV7 1423 aa23.13■■□□□ 1.29
HDDC3-205ENST00000559898 ZNF316A6NFI3 1004 aaPredicted RBP23.12■■□□□ 1.29
HDDC3-205ENST00000559898 ZEB1P37275 1124 aaPredicted RBP23.12■■□□□ 1.29
HDDC3-205ENST00000559898 NLRP10Q86W26 655 aa23.12■■□□□ 1.29
HDDC3-205ENST00000559898 C16orf71Q8IYS4 520 aaPredicted RBP23.12■■□□□ 1.29
HDDC3-205ENST00000559898 FKBP4Q02790 459 aaKnown RBP eCLIP23.11■■□□□ 1.29
HDDC3-205ENST00000559898 UTP14AQ9BVJ6 771 aaKnown RBP23.11■■□□□ 1.29
HDDC3-205ENST00000559898 COL4A1P02462 1669 aa23.1■■□□□ 1.29
HDDC3-205ENST00000559898 HCLS1P14317 486 aaPredicted RBP23.1■■□□□ 1.29
HDDC3-205ENST00000559898 ALDH1B1P30837 517 aa23.1■■□□□ 1.29
HDDC3-205ENST00000559898 HOXA10P31260 410 aaPredicted RBP23.1■■□□□ 1.29
HDDC3-205ENST00000559898 TCIRG1Q13488 830 aa23.1■■□□□ 1.29
HDDC3-205ENST00000559898 PPP1R42Q7Z4L9 355 aa23.1■■□□□ 1.29
HDDC3-205ENST00000559898 C8orf58Q8NAV2 365 aa23.1■■□□□ 1.29
HDDC3-205ENST00000559898 DDX60Q8IY21 1712 aaKnown RBP23.1■■□□□ 1.29
HDDC3-205ENST00000559898 ZNF541Q9H0D2 1346 aa23.09■■□□□ 1.29
HDDC3-205ENST00000559898 POTEIP0CG38 1075 aa23.09■■□□□ 1.29
HDDC3-205ENST00000559898 POTEJP0CG39 1038 aa23.09■■□□□ 1.29
HDDC3-205ENST00000559898 PARP10Q53GL7 1025 aa23.09■■□□□ 1.29
HDDC3-205ENST00000559898 SOGA3Q5TF21 947 aa23.09■■□□□ 1.29
HDDC3-205ENST00000559898 RPGRQ92834 1020 aaKnown RBP23.09■■□□□ 1.29
HDDC3-205ENST00000559898 VEGFAP15692 232 aaPredicted RBP23.08■■□□□ 1.29
HDDC3-205ENST00000559898 SLC10A5Q5PT55 438 aa23.08■■□□□ 1.29
HDDC3-205ENST00000559898 PHAXQ9H814 394 aaKnown RBP23.08■■□□□ 1.29
HDDC3-205ENST00000559898 IFT57Q9NWB7 429 aa23.08■■□□□ 1.29
HDDC3-205ENST00000559898 ATP5J2-PTCD1G3V325 749 aa23.07■■□□□ 1.28
HDDC3-205ENST00000559898 HOXB7P09629 217 aa23.07■■□□□ 1.28
HDDC3-205ENST00000559898 TSPYL6Q8N831 410 aa23.07■■□□□ 1.28
HDDC3-205ENST00000559898 DNAJC5GQ8N7S2 189 aa23.06■■□□□ 1.28
HDDC3-205ENST00000559898 TSR2Q969E8 191 aaKnown RBP23.06■■□□□ 1.28
HDDC3-205ENST00000559898 DBF4Q9UBU7 674 aaPredicted RBP23.06■■□□□ 1.28
HDDC3-205ENST00000559898 ABCC4O15439 1325 aa23.06■■□□□ 1.28
HDDC3-205ENST00000559898 PPEF1O14829 653 aaPredicted RBP23.05■■□□□ 1.28
HDDC3-205ENST00000559898 IARSP41252 1262 aaKnown RBP23.05■■□□□ 1.28
HDDC3-205ENST00000559898 APLP1P51693 650 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 GNAI1P63096 354 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 DPY19L2Q6NUT2 758 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 ANKRD13DQ6ZTN6 518 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 RTKN2Q8IZC4 609 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 PLBD2Q8NHP8 589 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 RBM17Q96I25 401 aaKnown RBP23.05■■□□□ 1.28
HDDC3-205ENST00000559898 CRAMP1Q96RY5 1269 aa23.05■■□□□ 1.28
HDDC3-205ENST00000559898 TRMT112Q9UI30 125 aaKnown RBP23.05■■□□□ 1.28
HDDC3-205ENST00000559898 FSTL1Q12841 308 aa23.04■■□□□ 1.28
HDDC3-205ENST00000559898 NLRP3Q96P20 1036 aa23.04■■□□□ 1.28
HDDC3-205ENST00000559898 ISCA1Q9BUE6 129 aa23.04■■□□□ 1.28
HDDC3-205ENST00000559898 HSP90AB3PQ58FF7 597 aa23.03■■□□□ 1.28
HDDC3-205ENST00000559898 RTL5Q5HYW3 569 aaPredicted RBP23.03■■□□□ 1.28
HDDC3-205ENST00000559898 MRS2Q9HD23 443 aa23.03■■□□□ 1.28
HDDC3-205ENST00000559898 SMC1BQ8NDV3 1235 aa23.02■■□□□ 1.28
HDDC3-205ENST00000559898 FAM89AQ96GI7 184 aa23.02■■□□□ 1.28
HDDC3-205ENST00000559898 PSMD1Q99460 953 aa23.01■■□□□ 1.27
HDDC3-205ENST00000559898 HYPKQ9NX55 129 aa23.01■■□□□ 1.27
HDDC3-205ENST00000559898 LTBP1Q14766 1721 aa23■■□□□ 1.27
HDDC3-205ENST00000559898 FZD9O00144 591 aa23■■□□□ 1.27
HDDC3-205ENST00000559898 WWC1Q8IX03 1113 aa23■■□□□ 1.27
HDDC3-205ENST00000559898 SALL2Q9Y467 1007 aaPredicted RBP23■■□□□ 1.27
HDDC3-205ENST00000559898 SH3TC1Q8TE82 1336 aa23■■□□□ 1.27
HDDC3-205ENST00000559898 JARID2Q92833 1246 aaPredicted RBP22.99■■□□□ 1.27
HDDC3-205ENST00000559898 SCN4AP35499 1836 aa22.98■■□□□ 1.27
HDDC3-205ENST00000559898 ANP32CO43423 234 aa22.98■■□□□ 1.27
HDDC3-205ENST00000559898 CALD1Q05682 793 aaKnown RBP22.97■■□□□ 1.27
HDDC3-205ENST00000559898 L3MBTL3Q96JM7 780 aaPredicted RBP22.97■■□□□ 1.27
HDDC3-205ENST00000559898 ATP6V0A2Q9Y487 856 aa22.97■■□□□ 1.27
HDDC3-205ENST00000559898 RNF123Q5XPI4 1314 aa22.97■■□□□ 1.27
HDDC3-205ENST00000559898 RIC3Q7Z5B4 369 aa22.96■■□□□ 1.27
HDDC3-205ENST00000559898 MYD88Q99836 296 aa22.96■■□□□ 1.27
HDDC3-205ENST00000559898 TAF1DQ9H5J8 278 aaPredicted RBP22.96■■□□□ 1.27
HDDC3-205ENST00000559898 DUOX1Q9NRD9 1551 aa22.96■■□□□ 1.27
HDDC3-205ENST00000559898 AOC3Q16853 763 aa22.95■■□□□ 1.26
HDDC3-205ENST00000559898 CCDC27Q2M243 656 aa22.95■■□□□ 1.26
HDDC3-205ENST00000559898 CC2D2BQ6DHV5 1058 aa22.95■■□□□ 1.26
HDDC3-205ENST00000559898 G2E3Q7L622 706 aa22.95■■□□□ 1.26
HDDC3-205ENST00000559898 ADAMTSL1Q8N6G6 1762 aa22.95■■□□□ 1.26
HDDC3-205ENST00000559898 LRRC37AA6NMS7 1700 aa22.94■■□□□ 1.26
HDDC3-205ENST00000559898 CELF1Q92879 486 aaKnown RBP22.94■■□□□ 1.26
HDDC3-205ENST00000559898 GRAPQ13588 217 aa22.93■■□□□ 1.26
HDDC3-205ENST00000559898 LARGE2Q8N3Y3 721 aa22.93■■□□□ 1.26
HDDC3-205ENST00000559898 GRAPLQ8TC17 118 aaPredicted RBP22.93■■□□□ 1.26
HDDC3-205ENST00000559898 SPINK5Q9NQ38 1064 aaPredicted RBP22.93■■□□□ 1.26
HDDC3-205ENST00000559898 GJA3Q9Y6H8 435 aa22.93■■□□□ 1.26
HDDC3-205ENST00000559898 GOLGA2Q08379 1002 aa22.92■■□□□ 1.26
HDDC3-205ENST00000559898 CHADLQ6NUI6 762 aa22.92■■□□□ 1.26
HDDC3-205ENST00000559898 DDX46Q7L014 1031 aaKnown RBP22.92■■□□□ 1.26
HDDC3-205ENST00000559898 SP8Q8IXZ3 490 aa22.92■■□□□ 1.26
HDDC3-205ENST00000559898 IRS4O14654 1257 aaPredicted RBP22.91■■□□□ 1.26
HDDC3-205ENST00000559898 PPIP5K2O43314 1243 aa22.91■■□□□ 1.26
HDDC3-205ENST00000559898 TRIM28Q13263 835 aaKnown RBP22.91■■□□□ 1.26
HDDC3-205ENST00000559898 EAPPQ56P03 285 aaPredicted RBP22.91■■□□□ 1.26
HDDC3-205ENST00000559898 JDP2Q8WYK2 163 aa22.91■■□□□ 1.26
HDDC3-205ENST00000559898 KLRG1Q96E93 195 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms