RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 ARHGAP27Q6ZUM4 889 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 NUTM1Q86Y26 1132 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 TSPYL6Q8N831 410 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 ANKRD36CQ5JPF3 1778 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 DALRD3Q5D0E6 543 aaKnown RBP12.48□□□□□ -0.41
SPG11-214ENST00000558989 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 H0YIN7 160 aa12.47□□□□□ -0.41
SPG11-214ENST00000558989 DDX21Q9NR30 783 aaKnown RBP eCLIP12.47□□□□□ -0.41
SPG11-214ENST00000558989 DIEXFQ68CQ4 756 aaKnown RBP12.46□□□□□ -0.41
SPG11-214ENST00000558989 LRP10Q7Z4F1 713 aa12.46□□□□□ -0.41
SPG11-214ENST00000558989 ERVV-1B6SEH8 477 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 APBB1O00213 710 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 CCDC27Q2M243 656 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 TPTE2Q6XPS3 522 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 PHAXQ9H814 394 aaKnown RBP12.46□□□□□ -0.42
SPG11-214ENST00000558989 SLX4Q8IY92 1834 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 ARFGEF2Q9Y6D5 1785 aa12.46□□□□□ -0.42
SPG11-214ENST00000558989 TNRC6CQ9HCJ0 1690 aaKnown RBP12.45□□□□□ -0.42
SPG11-214ENST00000558989 UBN2Q6ZU65 1347 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 PDE6BP35913 854 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 ERFEQ4G0M1 354 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 SUSD4Q5VX71 490 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
SPG11-214ENST00000558989 ZNF526Q8TF50 670 aaPredicted RBP12.45□□□□□ -0.42
SPG11-214ENST00000558989 BRIP1Q9BX63 1249 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 DBF4Q9UBU7 674 aaPredicted RBP12.45□□□□□ -0.42
SPG11-214ENST00000558989 SBF1O95248 1867 aa12.45□□□□□ -0.42
SPG11-214ENST00000558989 SPINK5Q9NQ38 1064 aaPredicted RBP12.44□□□□□ -0.42
SPG11-214ENST00000558989 FANCIQ9NVI1 1328 aa12.44□□□□□ -0.42
SPG11-214ENST00000558989 RAD21O60216 631 aa12.44□□□□□ -0.42
SPG11-214ENST00000558989 HOXB7P09629 217 aa12.44□□□□□ -0.42
SPG11-214ENST00000558989 MIER1Q8N108 512 aa12.44□□□□□ -0.42
SPG11-214ENST00000558989 TTLL6Q8N841 843 aa12.44□□□□□ -0.42
SPG11-214ENST00000558989 ZNF784Q8NCA9 323 aaPredicted RBP12.44□□□□□ -0.42
SPG11-214ENST00000558989 TAF1P21675 1872 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 ABCC12Q96J65 1359 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 ATP5J2-PTCD1G3V325 749 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 TWISTNBQ3B726 338 aaPredicted RBP12.43□□□□□ -0.42
SPG11-214ENST00000558989 ZNF34Q8IZ26 560 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 RGS22Q8NE09 1264 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 ATP10DQ9P241 1426 aa12.43□□□□□ -0.42
SPG11-214ENST00000558989 C21orf2O43822 256 aa12.42□□□□□ -0.42
SPG11-214ENST00000558989 RASSF7Q02833 373 aa12.42□□□□□ -0.42
SPG11-214ENST00000558989 EXOSC9Q06265 439 aaKnown RBP12.42□□□□□ -0.42
SPG11-214ENST00000558989 RTL5Q5HYW3 569 aaPredicted RBP12.42□□□□□ -0.42
SPG11-214ENST00000558989 ANKRD13DQ6ZTN6 518 aa12.42□□□□□ -0.42
SPG11-214ENST00000558989 HYPKQ9NX55 129 aa12.42□□□□□ -0.42
SPG11-214ENST00000558989 LAMB2P55268 1798 aa12.42□□□□□ -0.42
SPG11-214ENST00000558989 CCDC30Q5VVM6 783 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 RIC3Q7Z5B4 369 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 SYNE4Q8N205 404 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 NYXQ9GZU5 481 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 IL16Q14005 1332 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 SRGNP10124 158 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 PPP1R42Q7Z4L9 355 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 WDR63Q8IWG1 891 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 PLBD2Q8NHP8 589 aa12.41□□□□□ -0.42
SPG11-214ENST00000558989 CACNA1FO60840 1977 aa12.4□□□□□ -0.42
SPG11-214ENST00000558989 NTSR2O95665 410 aa12.4□□□□□ -0.42
SPG11-214ENST00000558989 TCIRG1Q13488 830 aa12.4□□□□□ -0.42
SPG11-214ENST00000558989 MASTLQ96GX5 879 aa12.4□□□□□ -0.42
SPG11-214ENST00000558989 UTP14AQ9BVJ6 771 aaKnown RBP12.4□□□□□ -0.42
SPG11-214ENST00000558989 STK31Q9BXU1 1019 aa12.4□□□□□ -0.42
SPG11-214ENST00000558989 CCER2I3L3R5 266 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 HCLS1P14317 486 aaPredicted RBP12.39□□□□□ -0.43
SPG11-214ENST00000558989 PARP10Q53GL7 1025 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 HSP90AB3PQ58FF7 597 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 PRPF40BQ6NWY9 871 aaKnown RBP12.39□□□□□ -0.43
SPG11-214ENST00000558989 OLFM4Q6UX06 510 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 C3orf67Q6ZVT6 689 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 G2E3Q7L622 706 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 NLRP10Q86W26 655 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 JARID2Q92833 1246 aaPredicted RBP12.39□□□□□ -0.43
SPG11-214ENST00000558989 MYD88Q99836 296 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 TRMT112Q9UI30 125 aaKnown RBP12.39□□□□□ -0.43
SPG11-214ENST00000558989 FER1L6Q2WGJ9 1857 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 C9orf131Q5VYM1 1079 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 KCNV2Q8TDN2 545 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 CNKSR1Q969H4 720 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 RNF181Q9P0P0 153 aa12.39□□□□□ -0.43
SPG11-214ENST00000558989 NPR1P16066 1061 aa12.38□□□□□ -0.43
SPG11-214ENST00000558989 STYK1Q6J9G0 422 aa12.38□□□□□ -0.43
SPG11-214ENST00000558989 SLC51AQ86UW1 340 aa12.38□□□□□ -0.43
SPG11-214ENST00000558989 RPGRQ92834 1020 aaKnown RBP12.38□□□□□ -0.43
SPG11-214ENST00000558989 MYH16Q9H6N6 1097 aa12.38□□□□□ -0.43
SPG11-214ENST00000558989 DDX60Q8IY21 1712 aaKnown RBP12.38□□□□□ -0.43
SPG11-214ENST00000558989 FAM89AQ96GI7 184 aa12.37□□□□□ -0.43
SPG11-214ENST00000558989 PDZRN3Q9UPQ7 1066 aa12.37□□□□□ -0.43
SPG11-214ENST00000558989 VAMP4O75379 141 aa12.37□□□□□ -0.43
SPG11-214ENST00000558989 CDCA7LQ96GN5 454 aa12.37□□□□□ -0.43
SPG11-214ENST00000558989 MAP3K2Q9Y2U5 619 aa12.37□□□□□ -0.43
SPG11-214ENST00000558989 TIAM2Q8IVF5 1701 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 PI4KAP2A4QPH2 592 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 PRELPP51888 382 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 PI4KAP1Q8N8J0 262 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 NLRP3Q96P20 1036 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 TRAIPQ9BWF2 469 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 SH3TC1Q8TE82 1336 aa12.36□□□□□ -0.43
SPG11-214ENST00000558989 DICER1Q9UPY3 1922 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms