RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 VPS36Q86VN1 386 aa16.03■□□□□ 0.16
SPG11-210ENST00000558319 PRG4Q92954 1404 aaPredicted RBP16.03■□□□□ 0.16
SPG11-210ENST00000558319 A0A1W2PRG0 241 aa16.03■□□□□ 0.16
SPG11-210ENST00000558319 DAAM2Q86T65 1068 aa16.03■□□□□ 0.16
SPG11-210ENST00000558319 TCEANC2Q96MN5 208 aa16.03■□□□□ 0.16
SPG11-210ENST00000558319 NOLC1Q14978 699 aaKnown RBP eCLIP16.03■□□□□ 0.16
SPG11-210ENST00000558319 CTCFLQ8NI51 663 aaPredicted RBP16.03■□□□□ 0.16
SPG11-210ENST00000558319 FSD2A1L4K1 749 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 TMEM110-MUSTN1A8MSY1 372 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 NFE2L2Q16236 605 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 DDX23Q9BUQ8 820 aaKnown RBP16.02■□□□□ 0.16
SPG11-210ENST00000558319 ZBTB21Q9ULJ3 1066 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 CAPN2P17655 700 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 DNAJC21Q5F1R6 531 aaKnown RBP16.02■□□□□ 0.16
SPG11-210ENST00000558319 BAG4O95429 457 aaKnown RBP16.02■□□□□ 0.16
SPG11-210ENST00000558319 TAOK3Q9H2K8 898 aa16.02■□□□□ 0.16
SPG11-210ENST00000558319 NEMFO60524 1076 aa16.02■□□□□ 0.15
SPG11-210ENST00000558319 SP4Q02446 784 aa16.02■□□□□ 0.15
SPG11-210ENST00000558319 RAB11FIP3O75154 756 aa16.02■□□□□ 0.15
SPG11-210ENST00000558319 SLC26A6Q9BXS9 759 aa16.02■□□□□ 0.15
SPG11-210ENST00000558319 VPS18Q9P253 973 aa16.02■□□□□ 0.15
SPG11-210ENST00000558319 SBNO2Q9Y2G9 1366 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 ZNF165P49910 485 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 PPARDQ03181 441 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 DNAI1Q9UI46 699 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 U3KPZ7 1027 aaPredicted RBP16.01■□□□□ 0.15
SPG11-210ENST00000558319 WDR63Q8IWG1 891 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 MAP3K12Q12852 859 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 FBXO31Q5XUX0 539 aaPredicted RBP16.01■□□□□ 0.15
SPG11-210ENST00000558319 ANKRD18BA2A2Z9 1011 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 TSPY2A6NKD2 308 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 UIMC1Q96RL1 719 aa16.01■□□□□ 0.15
SPG11-210ENST00000558319 CCDC194A0A1B0GVG4 234 aa16■□□□□ 0.15
SPG11-210ENST00000558319 TRIM21P19474 475 aaKnown RBP16■□□□□ 0.15
SPG11-210ENST00000558319 AFMP43652 599 aa16■□□□□ 0.15
SPG11-210ENST00000558319 ARFGAP3Q9NP61 516 aa16■□□□□ 0.15
SPG11-210ENST00000558319 CTAGE5O15320 804 aa16■□□□□ 0.15
SPG11-210ENST00000558319 IVLP07476 585 aa16■□□□□ 0.15
SPG11-210ENST00000558319 CCDC150Q8NCX0 1101 aa16■□□□□ 0.15
SPG11-210ENST00000558319 AKAP2Q9Y2D5 859 aa16■□□□□ 0.15
SPG11-210ENST00000558319 RFC4P35249 363 aa16■□□□□ 0.15
SPG11-210ENST00000558319 TMEM67Q5HYA8 995 aa16■□□□□ 0.15
SPG11-210ENST00000558319 NECAB1Q8N987 351 aa16■□□□□ 0.15
SPG11-210ENST00000558319 PPP1R14CQ8TAE6 165 aa16■□□□□ 0.15
SPG11-210ENST00000558319 PHACTR2O75167 634 aa16■□□□□ 0.15
SPG11-210ENST00000558319 MCM5P33992 734 aa16■□□□□ 0.15
SPG11-210ENST00000558319 KIF1BPQ96EK5 621 aa16■□□□□ 0.15
SPG11-210ENST00000558319 CCDC40Q4G0X9 1142 aa15.99■□□□□ 0.15
SPG11-210ENST00000558319 RIMBP2O15034 1052 aa15.99■□□□□ 0.15
SPG11-210ENST00000558319 CHST3Q7LGC8 479 aa15.99■□□□□ 0.15
SPG11-210ENST00000558319 SSH1Q8WYL5 1049 aa15.99■□□□□ 0.15
SPG11-210ENST00000558319 IQCA1Q86XH1 822 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 MRPS9P82933 396 aaKnown RBP15.98■□□□□ 0.15
SPG11-210ENST00000558319 ARID5AQ03989 594 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 DDX19AQ9NUU7 478 aaKnown RBP15.98■□□□□ 0.15
SPG11-210ENST00000558319 NAIPQ13075 1403 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 VGLL3A8MV65 326 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 SELENOSQ9BQE4 189 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 SMIM23A6NLE4 172 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 FAM160A1Q05DH4 1040 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 CATIPQ7Z7H3 387 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 TTC12Q9H892 705 aaPredicted RBP15.98■□□□□ 0.15
SPG11-210ENST00000558319 ATAD2BQ9ULI0 1458 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 IGF1RP08069 1367 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 LRRC9Q6ZRR7 1453 aa15.98■□□□□ 0.15
SPG11-210ENST00000558319 ZEB2O60315 1214 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 SLC39A6Q13433 755 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 PLIN2Q99541 437 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 STX8Q9UNK0 236 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 STX6O43752 255 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 XRCC6P12956 609 aaKnown RBP eCLIP15.97■□□□□ 0.15
SPG11-210ENST00000558319 CLCN1P35523 988 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 ANO6Q4KMQ2 910 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 CCDC186Q7Z3E2 898 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 LIMCH1Q9UPQ0 1083 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 ANKRD30BQ9BXX2 1392 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 TMEM266Q2M3C6 531 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 NAP1L3Q99457 506 aaPredicted RBP15.97■□□□□ 0.15
SPG11-210ENST00000558319 PKD2L1Q9P0L9 805 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 NAA25Q14CX7 972 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 ATP2B3Q16720 1220 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 LRSAM1Q6UWE0 723 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 LDHAL6AQ6ZMR3 332 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 DDX46Q7L014 1031 aaKnown RBP15.97■□□□□ 0.15
SPG11-210ENST00000558319 UBE3BQ7Z3V4 1068 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 VEZTQ9HBM0 779 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 SKILP12757 684 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 PTGS1P23219 599 aa15.97■□□□□ 0.15
SPG11-210ENST00000558319 KIF4AO95239 1232 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 CCDC121Q6ZUS5 278 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 KAT14Q9H8E8 782 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 EXOC5O00471 708 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 OTUD6BQ8N6M0 293 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 PROCA1Q8NCQ7 364 aaPredicted RBP15.96■□□□□ 0.15
SPG11-210ENST00000558319 CUX1P39880 1505 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 CCDC171Q6TFL3 1326 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 UBASH3AP57075 661 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 CAPZA3Q96KX2 299 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 CFAP57Q96MR6 1250 aa15.96■□□□□ 0.15
SPG11-210ENST00000558319 CCDC94Q9BW85 323 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms