RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 XAGE3Q8WTP9 111 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 NECTIN2Q92692 538 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 CHPF2Q9P2E5 772 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 SRCAPQ6ZRS2 3230 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 NEXNQ0ZGT2 675 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 CC2D2BQ6DHV5 1058 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 RIC3Q7Z5B4 369 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 NLRP3Q96P20 1036 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 WWC3Q9ULE0 1092 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 NRXN2Q9P2S2 1712 aa11.11□□□□□ -0.63
USP3-208ENST00000558285 FAM177BA6PVY3 158 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 GPTP24298 496 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 CCDC184Q52MB2 194 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 TTLL7Q6ZT98 887 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 ZNF34Q8IZ26 560 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 RBM17Q96I25 401 aaKnown RBP11.1□□□□□ -0.63
USP3-208ENST00000558285 GPBP1L1Q9HC44 474 aaPredicted RBP11.1□□□□□ -0.63
USP3-208ENST00000558285 FBXO3Q9UK99 471 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 KDM2BQ8NHM5 1336 aa11.1□□□□□ -0.63
USP3-208ENST00000558285 SRGNP10124 158 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 TCIRG1Q13488 830 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 PDIA6Q15084 440 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 HLFQ16534 295 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 TWISTNBQ3B726 338 aaPredicted RBP11.09□□□□□ -0.63
USP3-208ENST00000558285 ZNF784Q8NCA9 323 aaPredicted RBP11.09□□□□□ -0.63
USP3-208ENST00000558285 RIC1Q4ADV7 1423 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 SH3TC1Q8TE82 1336 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 LMNB1P20700 586 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 KCNA3P22001 575 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 RTKN2Q8IZC4 609 aa11.09□□□□□ -0.63
USP3-208ENST00000558285 TRMT112Q9UI30 125 aaKnown RBP11.09□□□□□ -0.63
USP3-208ENST00000558285 KLRG2A4D1S0 409 aaPredicted RBP11.08□□□□□ -0.64
USP3-208ENST00000558285 ELL2O00472 640 aaPredicted RBP11.08□□□□□ -0.64
USP3-208ENST00000558285 CCDC93Q567U6 631 aa11.08□□□□□ -0.64
USP3-208ENST00000558285 PRPF40BQ6NWY9 871 aaKnown RBP11.07□□□□□ -0.64
USP3-208ENST00000558285 TMC4Q7Z404 712 aa11.07□□□□□ -0.64
USP3-208ENST00000558285 TAOK3Q9H2K8 898 aa11.07□□□□□ -0.64
USP3-208ENST00000558285 RNF181Q9P0P0 153 aa11.07□□□□□ -0.64
USP3-208ENST00000558285 SALL2Q9Y467 1007 aaPredicted RBP11.07□□□□□ -0.64
USP3-208ENST00000558285 AFDNP55196 1824 aaKnown RBP11.07□□□□□ -0.64
USP3-208ENST00000558285 N4BP2Q86UW6 1770 aaPredicted RBP11.07□□□□□ -0.64
USP3-208ENST00000558285 TRIM28Q13263 835 aaKnown RBP11.06□□□□□ -0.64
USP3-208ENST00000558285 KRT24Q2M2I5 525 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 PROSER3Q2NL68 480 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 SUSD4Q5VX71 490 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 C9orf131Q5VYM1 1079 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 DPY19L2Q6NUT2 758 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 C16orf71Q8IYS4 520 aaPredicted RBP11.06□□□□□ -0.64
USP3-208ENST00000558285 LTBP3Q9NS15 1303 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 FANCIQ9NVI1 1328 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 E9PSI1 815 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 ANXA1P04083 346 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 ERFEQ4G0M1 354 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 SLC10A5Q5PT55 438 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 DDX46Q7L014 1031 aaKnown RBP11.06□□□□□ -0.64
USP3-208ENST00000558285 NLRP10Q86W26 655 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 C8orf58Q8NAV2 365 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 TSR2Q969E8 191 aaKnown RBP11.06□□□□□ -0.64
USP3-208ENST00000558285 ZNF428Q96B54 188 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 CRAMP1Q96RY5 1269 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 ARFGEF1Q9Y6D6 1849 aa11.06□□□□□ -0.64
USP3-208ENST00000558285 C21orf2O43822 256 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 NTSR2O95665 410 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 CRY2Q49AN0 593 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 LRP10Q7Z4F1 713 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 NUTM1Q86Y26 1132 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 CCDC24Q8N4L8 307 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 CCDC191Q8NCU4 936 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 SUPT20HQ8NEM7 779 aa11.05□□□□□ -0.64
USP3-208ENST00000558285 BBOX1O75936 387 aa11.04□□□□□ -0.64
USP3-208ENST00000558285 HOXA10P31260 410 aaPredicted RBP11.04□□□□□ -0.64
USP3-208ENST00000558285 KSR2Q6VAB6 950 aa11.04□□□□□ -0.64
USP3-208ENST00000558285 CWC25Q9NXE8 425 aaPredicted RBP11.04□□□□□ -0.64
USP3-208ENST00000558285 UBN2Q6ZU65 1347 aa11.04□□□□□ -0.64
USP3-208ENST00000558285 DLEC1Q9Y238 1755 aa11.04□□□□□ -0.64
USP3-208ENST00000558285 KIAA1551Q9HCM1 1747 aa11.04□□□□□ -0.64
USP3-208ENST00000558285 C19orf67A6NJJ6 358 aa11.03□□□□□ -0.64
USP3-208ENST00000558285 PPEF1O14829 653 aaPredicted RBP11.03□□□□□ -0.64
USP3-208ENST00000558285 FKBP5Q13451 457 aaPredicted RBP11.03□□□□□ -0.64
USP3-208ENST00000558285 JDP2Q8WYK2 163 aa11.03□□□□□ -0.64
USP3-208ENST00000558285 ISCA1Q9BUE6 129 aa11.03□□□□□ -0.64
USP3-208ENST00000558285 METTL22Q9BUU2 404 aaPredicted RBP11.03□□□□□ -0.64
USP3-208ENST00000558285 VPS33BQ9H267 617 aa11.03□□□□□ -0.64
USP3-208ENST00000558285 ZBTB12Q9Y330 459 aaPredicted RBP11.03□□□□□ -0.64
USP3-208ENST00000558285 ADCY9O60503 1353 aa11.03□□□□□ -0.64
USP3-208ENST00000558285 NUP98P52948 1817 aa11.02□□□□□ -0.64
USP3-208ENST00000558285 BRCA1P38398 1863 aaKnown RBP11.02□□□□□ -0.64
USP3-208ENST00000558285 CT47B1P0C2W7 299 aaPredicted RBP11.02□□□□□ -0.65
USP3-208ENST00000558285 FKBP4Q02790 459 aaKnown RBP eCLIP11.02□□□□□ -0.65
USP3-208ENST00000558285 EXOSC9Q06265 439 aaKnown RBP11.02□□□□□ -0.65
USP3-208ENST00000558285 ZBTB38Q8NAP3 1195 aaPredicted RBP11.02□□□□□ -0.65
USP3-208ENST00000558285 MYD88Q99836 296 aa11.02□□□□□ -0.65
USP3-208ENST00000558285 MAP3K2Q9Y2U5 619 aa11.02□□□□□ -0.65
USP3-208ENST00000558285 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 FLIIQ13045 1269 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 CCDC152Q4G0S7 254 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 ZNF526Q8TF50 670 aaPredicted RBP11.01□□□□□ -0.65
USP3-208ENST00000558285 ABCC12Q96J65 1359 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 IRS4O14654 1257 aaPredicted RBP11.01□□□□□ -0.65
USP3-208ENST00000558285 PCCAP05165 728 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms