RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 AMIGO3Q86WK7 504 aa10.19□□□□□ -0.78
SPG11-205ENST00000558080 FLAD1Q8NFF5 587 aa10.19□□□□□ -0.78
SPG11-205ENST00000558080 CDHR5Q9HBB8 845 aa10.19□□□□□ -0.78
SPG11-205ENST00000558080 WDR70Q9NW82 654 aa10.19□□□□□ -0.78
SPG11-205ENST00000558080 PNMA3Q9UL41 463 aa10.19□□□□□ -0.78
SPG11-205ENST00000558080 KDRP35968 1356 aa10.18□□□□□ -0.78
SPG11-205ENST00000558080 DIAPH1O60610 1272 aaKnown RBP10.18□□□□□ -0.78
SPG11-205ENST00000558080 MTRQ99707 1265 aa10.18□□□□□ -0.78
SPG11-205ENST00000558080 MAP3K5Q99683 1374 aa10.17□□□□□ -0.78
SPG11-205ENST00000558080 TJP1Q07157 1748 aa10.17□□□□□ -0.78
SPG11-205ENST00000558080 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.17□□□□□ -0.78
SPG11-205ENST00000558080 GNPATO15228 680 aa10.17□□□□□ -0.78
SPG11-205ENST00000558080 NFATC2IPQ8NCF5 419 aa10.17□□□□□ -0.78
SPG11-205ENST00000558080 IL21Q9HBE4 155 aa10.17□□□□□ -0.78
SPG11-205ENST00000558080 C4AP0C0L4 1744 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 NPC1L1Q9UHC9 1359 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 U2SURPO15042 1029 aaKnown RBP10.16□□□□□ -0.78
SPG11-205ENST00000558080 PTCD1O75127 700 aaKnown RBP10.16□□□□□ -0.78
SPG11-205ENST00000558080 GPR162Q16538 588 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 AKAP4Q5JQC9 854 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 NUDT18Q6ZVK8 323 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 NLGN2Q8NFZ4 835 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 SLC4A9Q96Q91 983 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 LGR6Q9HBX8 967 aa10.16□□□□□ -0.78
SPG11-205ENST00000558080 COL3A1P02461 1466 aaPredicted RBP10.16□□□□□ -0.78
SPG11-205ENST00000558080 SSFA2P28290 1259 aa10.15□□□□□ -0.78
SPG11-205ENST00000558080 TTC13Q8NBP0 860 aa10.15□□□□□ -0.78
SPG11-205ENST00000558080 N4BP2Q86UW6 1770 aaPredicted RBP10.15□□□□□ -0.78
SPG11-205ENST00000558080 SIPA1L3O60292 1781 aaPredicted RBP10.14□□□□□ -0.79
SPG11-205ENST00000558080 DLG5Q8TDM6 1919 aa10.14□□□□□ -0.79
SPG11-205ENST00000558080 RNMTO43148 476 aaKnown RBP10.14□□□□□ -0.79
SPG11-205ENST00000558080 MTHFSDQ2M296 383 aaKnown RBP10.14□□□□□ -0.79
SPG11-205ENST00000558080 ADAMTS7Q9UKP4 1686 aa10.14□□□□□ -0.79
SPG11-205ENST00000558080 KIF13BQ9NQT8 1826 aa10.13□□□□□ -0.79
SPG11-205ENST00000558080 TRAPPC3LQ5T215 181 aa10.13□□□□□ -0.79
SPG11-205ENST00000558080 PAXIP1Q6ZW49 1069 aaPredicted RBP10.13□□□□□ -0.79
SPG11-205ENST00000558080 SLC52A2Q9HAB3 445 aa10.13□□□□□ -0.79
SPG11-205ENST00000558080 RTCBQ9Y3I0 505 aaKnown RBP10.13□□□□□ -0.79
SPG11-205ENST00000558080 UBR2Q8IWV8 1755 aa10.13□□□□□ -0.79
SPG11-205ENST00000558080 CICQ96RK0 1608 aaPredicted RBP10.12□□□□□ -0.79
SPG11-205ENST00000558080 APLP1P51693 650 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 SLC39A6Q13433 755 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 RC3H1Q5TC82 1133 aaKnown RBP10.12□□□□□ -0.79
SPG11-205ENST00000558080 PPP1R18Q6NYC8 613 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 NECTIN2Q92692 538 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 ARHGEF1Q92888 912 aaKnown RBP10.12□□□□□ -0.79
SPG11-205ENST00000558080 CFAP53Q96M91 514 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 CFAP44Q96MT7 982 aa10.12□□□□□ -0.79
SPG11-205ENST00000558080 CNTNAP4Q9C0A0 1308 aa10.11□□□□□ -0.79
SPG11-205ENST00000558080 RPS6KA4O75676 772 aa10.11□□□□□ -0.79
SPG11-205ENST00000558080 PPP2R1AP30153 589 aa10.11□□□□□ -0.79
SPG11-205ENST00000558080 CRKLP46109 303 aaKnown RBP10.11□□□□□ -0.79
SPG11-205ENST00000558080 PRKD2Q9BZL6 878 aa10.11□□□□□ -0.79
SPG11-205ENST00000558080 NPDC1Q9NQX5 325 aaPredicted RBP10.11□□□□□ -0.79
SPG11-205ENST00000558080 CD2APQ9Y5K6 639 aa10.11□□□□□ -0.79
SPG11-205ENST00000558080 V9GY48 417 aaPredicted RBP10.11□□□□□ -0.79
SPG11-205ENST00000558080 AFDNP55196 1824 aaKnown RBP10.11□□□□□ -0.79
SPG11-205ENST00000558080 MRC1P22897 1456 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 LCE2BO14633 110 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 GFRA3O60609 400 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 RNF40O75150 1001 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 YBX3P16989 372 aaKnown RBP eCLIP10.1□□□□□ -0.79
SPG11-205ENST00000558080 RFC4P35249 363 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 ZNF516Q92618 1163 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 KIAA1551Q9HCM1 1747 aa10.1□□□□□ -0.79
SPG11-205ENST00000558080 KCPQ6ZWJ8 1503 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 BRCA1P38398 1863 aaKnown RBP10.09□□□□□ -0.79
SPG11-205ENST00000558080 GNAT3A8MTJ3 354 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 MMP10P09238 476 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 U2AF1L5P0DN76 240 aaPredicted RBP10.09□□□□□ -0.79
SPG11-205ENST00000558080 PRKAR2BP31323 418 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 U2AF1Q01081 240 aaKnown RBP eCLIP10.09□□□□□ -0.79
SPG11-205ENST00000558080 PADI6Q6TGC4 694 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 DNAJC10Q8IXB1 793 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 PHACTR3Q96KR7 559 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 WWC3Q9ULE0 1092 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 NUDCQ9Y266 331 aa10.09□□□□□ -0.79
SPG11-205ENST00000558080 GYS1P13807 737 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 INTS5Q6P9B9 1019 aaKnown RBP10.08□□□□□ -0.8
SPG11-205ENST00000558080 NLGN1Q8N2Q7 840 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 ZNF784Q8NCA9 323 aaPredicted RBP10.08□□□□□ -0.8
SPG11-205ENST00000558080 IL17REQ8NFR9 667 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 GAS2L2Q8NHY3 880 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 RSPH6AQ9H0K4 717 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.08□□□□□ -0.8
SPG11-205ENST00000558080 SRP68Q9UHB9 627 aaKnown RBP10.08□□□□□ -0.8
SPG11-205ENST00000558080 UTRNP46939 3433 aa10.08□□□□□ -0.8
SPG11-205ENST00000558080 CCDC88AQ3V6T2 1871 aa10.07□□□□□ -0.8
SPG11-205ENST00000558080 GRIN3BO60391 1043 aa10.07□□□□□ -0.8
SPG11-205ENST00000558080 CYP19A1P11511 503 aaPredicted RBP10.07□□□□□ -0.8
SPG11-205ENST00000558080 TEFQ10587 303 aa10.07□□□□□ -0.8
SPG11-205ENST00000558080 SWT1Q5T5J6 900 aaKnown RBP10.07□□□□□ -0.8
SPG11-205ENST00000558080 SLF2Q8IX21 1173 aa10.07□□□□□ -0.8
SPG11-205ENST00000558080 CCDC87Q9NVE4 849 aa10.07□□□□□ -0.8
SPG11-205ENST00000558080 GOLGB1Q14789 3259 aaKnown RBP10.06□□□□□ -0.8
SPG11-205ENST00000558080 ARFGEF1Q9Y6D6 1849 aa10.06□□□□□ -0.8
SPG11-205ENST00000558080 NRG2O14511 850 aaPredicted RBP10.06□□□□□ -0.8
SPG11-205ENST00000558080 TRAF7Q6Q0C0 670 aa10.06□□□□□ -0.8
SPG11-205ENST00000558080 TTC5Q8N0Z6 440 aa10.06□□□□□ -0.8
SPG11-205ENST00000558080 PARP3Q9Y6F1 533 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms