RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 NYXQ9GZU5 481 aa18.94■□□□□ 0.62
VIPAS39-210ENST00000557466 RIC1Q4ADV7 1423 aa18.93■□□□□ 0.62
VIPAS39-210ENST00000557466 BRPF1P55201 1214 aaPredicted RBP18.93■□□□□ 0.62
VIPAS39-210ENST00000557466 PPP1R42Q7Z4L9 355 aa18.93■□□□□ 0.62
VIPAS39-210ENST00000557466 PTPRCP08575 1304 aa18.93■□□□□ 0.62
VIPAS39-210ENST00000557466 IGKV5-2P06315 115 aa18.92■□□□□ 0.62
VIPAS39-210ENST00000557466 TRIM28Q13263 835 aaKnown RBP18.92■□□□□ 0.62
VIPAS39-210ENST00000557466 ERFEQ4G0M1 354 aa18.92■□□□□ 0.62
VIPAS39-210ENST00000557466 UTP14AQ9BVJ6 771 aaKnown RBP18.92■□□□□ 0.62
VIPAS39-210ENST00000557466 GTF2E1P29083 439 aaPredicted RBP18.91■□□□□ 0.62
VIPAS39-210ENST00000557466 NEXNQ0ZGT2 675 aa18.91■□□□□ 0.62
VIPAS39-210ENST00000557466 CWF19L2Q2TBE0 894 aaKnown RBP18.91■□□□□ 0.62
VIPAS39-210ENST00000557466 RNF123Q5XPI4 1314 aa18.91■□□□□ 0.62
VIPAS39-210ENST00000557466 KIF16BQ96L93 1317 aa18.91■□□□□ 0.62
VIPAS39-210ENST00000557466 NEURL1BA8MQ27 555 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 BCAR3O75815 825 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 DPEP1P16444 411 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 CHRNA5P30532 468 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 TGFB2P61812 414 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 CCDC191Q8NCU4 936 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 BRIP1Q9BX63 1249 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 CWC25Q9NXE8 425 aaPredicted RBP18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 TRMT112Q9UI30 125 aaKnown RBP18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 NOB1Q9ULX3 412 aaKnown RBP18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 MYH3P11055 1940 aa18.9■□□□□ 0.62
VIPAS39-210ENST00000557466 A0A0G2JLW4 131 aa18.89■□□□□ 0.61
VIPAS39-210ENST00000557466 SYNE4Q8N205 404 aa18.89■□□□□ 0.61
VIPAS39-210ENST00000557466 SH3TC1Q8TE82 1336 aa18.89■□□□□ 0.61
VIPAS39-210ENST00000557466 ARFGEF1Q9Y6D6 1849 aa18.88■□□□□ 0.61
VIPAS39-210ENST00000557466 PDE6BP35913 854 aa18.88■□□□□ 0.61
VIPAS39-210ENST00000557466 BEND3Q5T5X7 828 aa18.88■□□□□ 0.61
VIPAS39-210ENST00000557466 C2CD5Q86YS7 1000 aa18.88■□□□□ 0.61
VIPAS39-210ENST00000557466 LINS1Q8NG48 757 aa18.88■□□□□ 0.61
VIPAS39-210ENST00000557466 KCNA3P22001 575 aa18.87■□□□□ 0.61
VIPAS39-210ENST00000557466 RTL5Q5HYW3 569 aaPredicted RBP18.87■□□□□ 0.61
VIPAS39-210ENST00000557466 SLC4A10Q6U841 1118 aa18.87■□□□□ 0.61
VIPAS39-210ENST00000557466 FAM89AQ96GI7 184 aa18.87■□□□□ 0.61
VIPAS39-210ENST00000557466 WWC3Q9ULE0 1092 aa18.87■□□□□ 0.61
VIPAS39-210ENST00000557466 PCCAP05165 728 aaPredicted RBP18.86■□□□□ 0.61
VIPAS39-210ENST00000557466 SLC10A5Q5PT55 438 aa18.86■□□□□ 0.61
VIPAS39-210ENST00000557466 C3orf67Q6ZVT6 689 aa18.86■□□□□ 0.61
VIPAS39-210ENST00000557466 ZBTB38Q8NAP3 1195 aaPredicted RBP18.86■□□□□ 0.61
VIPAS39-210ENST00000557466 KLRG2A4D1S0 409 aaPredicted RBP18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 H0YIN7 160 aa18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 HCLS1P14317 486 aaPredicted RBP18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 GCKRQ14397 625 aa18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 JARID2Q92833 1246 aaPredicted RBP18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 API5Q9BZZ5 524 aaKnown RBP18.85■□□□□ 0.61
VIPAS39-210ENST00000557466 SLX4Q8IY92 1834 aa18.84■□□□□ 0.61
VIPAS39-210ENST00000557466 FRAT1Q92837 279 aaPredicted RBP18.84■□□□□ 0.61
VIPAS39-210ENST00000557466 PDZRN3Q9UPQ7 1066 aa18.84■□□□□ 0.61
VIPAS39-210ENST00000557466 TNNQ9UQP3 1299 aa18.84■□□□□ 0.61
VIPAS39-210ENST00000557466 TAF1P21675 1872 aa18.84■□□□□ 0.61
VIPAS39-210ENST00000557466 CDHR2Q9BYE9 1310 aa18.83■□□□□ 0.61
VIPAS39-210ENST00000557466 IRS4O14654 1257 aaPredicted RBP18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 ALDH1L1O75891 902 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 SRGNP10124 158 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 CRY2Q49AN0 593 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 ARHGAP45Q92619 1136 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 SRCIN1Q9C0H9 1055 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 RCAN3Q9UKA8 241 aa18.83■□□□□ 0.6
VIPAS39-210ENST00000557466 ABCC4O15439 1325 aa18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 TRIM27P14373 513 aa18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 UBE3BQ7Z3V4 1068 aa18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 PELP1Q8IZL8 1130 aaKnown RBP18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 PIM2Q9P1W9 311 aa18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 COL4A1P02462 1669 aa18.82■□□□□ 0.6
VIPAS39-210ENST00000557466 H7C1W4 665 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 IPO8O15397 1037 aaKnown RBP18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 YBX3P16989 372 aaKnown RBP eCLIP18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 CASP7P55210 303 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 ZKSCAN2Q63HK3 967 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 STYK1Q6J9G0 422 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 ATF7IPQ6VMQ6 1270 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 ZNF622Q969S3 477 aaKnown RBP eCLIP18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 MASTLQ96GX5 879 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 NLRP3Q96P20 1036 aa18.81■□□□□ 0.6
VIPAS39-210ENST00000557466 SPEF2Q9C093 1822 aa18.8■□□□□ 0.6
VIPAS39-210ENST00000557466 NPR1P16066 1061 aa18.8■□□□□ 0.6
VIPAS39-210ENST00000557466 BCS1LQ9Y276 419 aa18.8■□□□□ 0.6
VIPAS39-210ENST00000557466 GRM8O00222 908 aa18.79■□□□□ 0.6
VIPAS39-210ENST00000557466 RPGRQ92834 1020 aaKnown RBP18.79■□□□□ 0.6
VIPAS39-210ENST00000557466 PDE8AO60658 829 aa18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 CCT4P50991 539 aaKnown RBP18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 GPR162Q16538 588 aa18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 DALRD3Q5D0E6 543 aaKnown RBP18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 TTLL6Q8N841 843 aa18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 CLUAP1Q96AJ1 413 aa18.78■□□□□ 0.6
VIPAS39-210ENST00000557466 LRRC37AA6NMS7 1700 aa18.77■□□□□ 0.6
VIPAS39-210ENST00000557466 HOXA10P31260 410 aaPredicted RBP18.77■□□□□ 0.6
VIPAS39-210ENST00000557466 SF3B3Q15393 1217 aaKnown RBP18.77■□□□□ 0.6
VIPAS39-210ENST00000557466 CNKSR1Q969H4 720 aa18.77■□□□□ 0.6
VIPAS39-210ENST00000557466 C9orf78Q9NZ63 289 aaPredicted RBP18.77■□□□□ 0.6
VIPAS39-210ENST00000557466 UTYO14607 1347 aa18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 FER1L6Q2WGJ9 1857 aa18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 HSP90B1P14625 803 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 CTSWP56202 376 aa18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 INTS3Q68E01 1043 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 PRPF40BQ6NWY9 871 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-210ENST00000557466 PLA2G12BQ9BX93 195 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms