RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CENPH	Q9H3R5	247 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	ANAPC15	P60006	121 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	HSP90AB3P	Q58FF7	597 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	KLHL10	Q6JEL2	608 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	LARP1	Q6PKG0	1096 aa	Known RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	MPRIP	Q6WCQ1	1025 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC148	Q8NFR7	591 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC47	Q96A33	483 aa	Known RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	TSPYL1	Q9H0U9	437 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	POLK	Q9UBT6	870 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	DNAI1	Q9UI46	699 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	NPC1L1	Q9UHC9	1359 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIF5C	O60282	957 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	ANXA1	P04083	346 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	EIF4A2	Q14240	407 aa	Known RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	DHX8	Q14562	1220 aa	Known RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC181	Q5TID7	509 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CREB3L3	Q68CJ9	461 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CDC37L1	Q7L3B6	337 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIAA1328	Q86T90	577 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC191	Q8NCU4	936 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	NEK1	Q96PY6	1258 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	PTPRT	O14522	1441 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	UNC13B	O14795	1591 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	GOLGA8B	A8MQT2	603 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	EPB41L2	O43491	1005 aa	Known RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	IMMT	Q16891	758 aa	Known RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	C8orf76	Q96K31	380 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	NLRP2	Q9NX02	1062 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	PALD1	Q9ULE6	856 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	ATP10A	O60312	1499 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIAA0754	O94854	1291 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	SLU7	O95391	586 aa	Known RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	SYT1	P21579	422 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	VPS18	Q9P253	973 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005		U3KPZ7	1027 aa	Predicted RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	GTF2A1	P52655	376 aa	Predicted RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	TERF1	P54274	439 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	MTHFSD	Q2M296	383 aa	Known RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	CHST3	Q7LGC8	479 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC12	Q8WUD4	166 aa	Predicted RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	CNNM1	Q9NRU3	951 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	NCKAP5L	Q9HCH0	1330 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	NPAT	Q14207	1427 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	EPS15	P42566	896 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	HAND2	P61296	217 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	FAM69C	Q0P6D2	419 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	APOBR	Q0VD83	1088 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	KARS	Q15046	597 aa	Known RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIF6	Q6ZMV9	814 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	JMY	Q8N9B5	988 aa		5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	NUP88	Q99567	741 aa	Predicted RBP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.79	□□□□□ -1.48
SYNE2-223	ENST00000557005	CEP152	O94986	1710 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ABCC4	O15439	1325 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	GOLIM4	O00461	696 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	SLC3A2	P08195	630 aa	Known RBP	5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC129	Q6ZRS4	1044 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	CNNM3	Q8NE01	707 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	INTS4	Q96HW7	963 aa	Known RBP	5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	CLSTN2	Q9H4D0	955 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	PUF60	Q9UHX1	559 aa	Known RBP	5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ABCA6	Q8N139	1617 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	LAMC1	P11047	1609 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	XBP1	P17861	261 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	GNG11	P61952	73 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	JAKMIP3	Q5VZ66	844 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	VPS37D	Q86XT2	251 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ECHDC1	Q9NTX5	307 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	IFNK	Q9P0W0	207 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	TBC1D2B	Q9UPU7	963 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	UBASH3A	P57075	661 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIF4B	Q2VIQ3	1234 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ARHGAP29	Q52LW3	1261 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZSCAN25	Q6NSZ9	544 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	RAPGEF4	Q8WZA2	1011 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	RSPH14	Q9UHP6	348 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	ABCA8	O94911	1581 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	SLC27A2	O14975	620 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	MARCKS	P29966	332 aa	Predicted RBP	5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	CABP4	P57796	275 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	FAM173B	Q6P4H8	233 aa		5.78	□□□□□ -1.48
SYNE2-223	ENST00000557005	CDKL5	O76039	1030 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	BRD1	O95696	1058 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	IL13	P35225	146 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	EVA1C	P58658	441 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	SSRP1	Q08945	709 aa	Known RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTR9	Q6PD62	1173 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	TANGO6	Q9C0B7	1094 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	DEF6	Q9H4E7	631 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PHAX	Q9H814	394 aa	Known RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PNMA6E	A0A0J9YXQ4	647 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	SHTN1	A0MZ66	631 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	SART3	Q15020	963 aa	Known RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	ATP2B3	Q16720	1220 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	BRF1	Q92994	677 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	FEZ1	Q99689	392 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	RNF216	Q9NWF9	866 aa	Predicted RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	NRBP1	Q9UHY1	535 aa		5.77	□□□□□ -1.49

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