RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TFCP2Q12800 502 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 SLFNL1Q499Z3 407 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 CREBRFQ8IUR6 639 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 MAP2P11137 1827 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 HTATSF1O43719 755 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 RAD50Q92878 1312 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 USP16Q9Y5T5 823 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 ARHGEF10O15013 1369 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 GPTP24298 496 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 A0A0D9SFI3 127 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 TPM2P07951 284 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 PDCP20941 246 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 DDIT3P35638 169 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 LINS1Q8NG48 757 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 DACT1Q9NYF0 836 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 CFAP74Q9C0B2 1584 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 UBE2HP62256 183 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ME3Q16798 604 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ISM2Q6H9L7 571 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ERCC4Q92889 916 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ZNF496Q96IT1 587 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 DBNDD2Q9BQY9 259 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ZKSCAN5Q9Y2L8 839 aa14.4□□□□□ -0.1
CCDC88C-211ENST00000556726 ZNF594Q96JF6 807 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 JAK2O60674 1132 aa14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 GIGYF1O75420 1035 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 MAP3K11Q16584 847 aa14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 CCDC73Q6ZRK6 1079 aa14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 OSBPL3Q9H4L5 887 aa14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 CCDC82Q8N4S0 544 aa14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 ZSCAN31Q96LW9 406 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-211ENST00000556726 CCDC171Q6TFL3 1326 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 HIP1O00291 1037 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 CDC37L1Q7L3B6 337 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 LUZP1Q86V48 1076 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 A0A087WWV3 80 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 RRP12Q5JTH9 1297 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 PI4K2BQ8TCG2 481 aa14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 INTS4Q96HW7 963 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-211ENST00000556726 Q6ZUG5 572 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 RALYLQ86SE5 291 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 CCDC144CPQ8IYA2 1237 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 LSG1Q9H089 658 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 NCOA5Q9HCD5 579 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 SIGLEC1Q9BZZ2 1709 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 POLR3DP05423 398 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 ZNF790Q6PG37 636 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 CRB1P82279 1406 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 MYO5BQ9ULV0 1848 aa14.37□□□□□ -0.11
CCDC88C-211ENST00000556726 BIN1O00499 593 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 IFIT1P09914 478 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 NFXL1Q6ZNB6 911 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 NEK1Q96PY6 1258 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 TPCN1Q9ULQ1 816 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 AXIN2Q9Y2T1 843 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 KIF24Q5T7B8 1368 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 SLC27A2O14975 620 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 TTC39AQ5SRH9 613 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 SIRT1Q96EB6 747 aa14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 C16orf45Q96MC5 204 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 SH2B1Q9NRF2 756 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-211ENST00000556726 KINO60870 393 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 APOBRQ0VD83 1088 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 DDX21Q9NR30 783 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 CEP126Q9P2H0 1117 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 IDH1O75874 414 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 A1BGP04217 495 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 CCDC57Q2TAC2 916 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 OTUD7BQ6GQQ9 843 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 ZNF589Q86UQ0 364 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 DNAJC25Q9H1X3 360 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 STAP2Q9UGK3 403 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 RRP9O43818 475 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 OFD1O75665 1012 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 KIF3AQ9Y496 699 aa14.35□□□□□ -0.11
CCDC88C-211ENST00000556726 ADGRB2O60241 1585 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 ALDH1L1O75891 902 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 ANKRD1Q15327 319 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 TPD52L1Q16890 204 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 ANO6Q4KMQ2 910 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 LIG1P18858 919 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 STK38Q15208 465 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 IFNL2Q8IZJ0 200 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 PPP1R9BQ96SB3 815 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 CNNM1Q9NRU3 951 aa14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 TRMT1Q9NXH9 659 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 NOL7Q9UMY1 257 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-211ENST00000556726 TTC41PQ6P2S7 1318 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 LETM1O95202 739 aaPredicted RBP14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 RXRAP19793 462 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 TRDNQ13061 729 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 EPHA10Q5JZY3 1008 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 SYNE3Q6ZMZ3 975 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 MTMR7Q9Y216 660 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 TAF6LQ9Y6J9 622 aa14.33□□□□□ -0.11
CCDC88C-211ENST00000556726 CLTCQ00610 1675 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-211ENST00000556726 SASH1O94885 1247 aa14.33□□□□□ -0.12
CCDC88C-211ENST00000556726 SNRPA1P09661 255 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-211ENST00000556726 TMEM131LA2VDJ0 1609 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms