RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 GATA4P43694 442 aa8.41□□□□□ -1.06
SCFD1-219ENST00000556413 DOC2BQ14184 412 aa8.41□□□□□ -1.06
SCFD1-219ENST00000556413 XP32Q5T750 250 aa8.41□□□□□ -1.06
SCFD1-219ENST00000556413 C20orf204Q6ZNR8 217 aa8.41□□□□□ -1.06
SCFD1-219ENST00000556413 BHMTQ93088 406 aa8.41□□□□□ -1.06
SCFD1-219ENST00000556413 CALR3Q96L12 384 aaKnown RBP8.41□□□□□ -1.06
SCFD1-219ENST00000556413 NID1P14543 1247 aa8.4□□□□□ -1.06
SCFD1-219ENST00000556413 DPYDQ12882 1025 aa8.4□□□□□ -1.06
SCFD1-219ENST00000556413 HIF1AQ16665 826 aa8.4□□□□□ -1.06
SCFD1-219ENST00000556413 PRRT3Q5FWE3 981 aa8.4□□□□□ -1.06
SCFD1-219ENST00000556413 HINFPQ9BQA5 517 aa8.4□□□□□ -1.06
SCFD1-219ENST00000556413 A6NJR5 290 aa8.39□□□□□ -1.07
SCFD1-219ENST00000556413 FAM229AH3BQW9 127 aa8.39□□□□□ -1.07
SCFD1-219ENST00000556413 ITGB7P26010 798 aa8.38□□□□□ -1.07
SCFD1-219ENST00000556413 RTN1Q16799 776 aa8.38□□□□□ -1.07
SCFD1-219ENST00000556413 IER5Q5VY09 327 aa8.38□□□□□ -1.07
SCFD1-219ENST00000556413 BCS1LQ9Y276 419 aa8.38□□□□□ -1.07
SCFD1-219ENST00000556413 FAM196BA6NMK8 535 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L15C9J2P7 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L10C9JJH3 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L13C9JLJ4 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L12C9JPN9 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L11C9JVI0 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L21D6R901 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L18D6R9N7 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L22D6RA61 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L17D6RBQ6 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L19D6RCP7 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L20D6RJB6 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 IGFBP4P22692 258 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 TBC1D8BQ0IIM8 1120 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 USP17L24Q0WX57 530 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 TRIM28Q13263 835 aaKnown RBP8.37□□□□□ -1.07
SCFD1-219ENST00000556413 ANKMY2Q8IV38 441 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 GSX2Q9BZM3 304 aa8.37□□□□□ -1.07
SCFD1-219ENST00000556413 UBE2OQ9C0C9 1292 aaKnown RBP8.37□□□□□ -1.07
SCFD1-219ENST00000556413 DMGDHQ9UI17 866 aaKnown RBP8.37□□□□□ -1.07
SCFD1-219ENST00000556413 TGFBR3LH3BV60 316 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 APBA3O96018 575 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 LMOD1P29536 600 aaPredicted RBP8.36□□□□□ -1.07
SCFD1-219ENST00000556413 SEMA6BQ9H3T3 888 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 IGFLR1Q9H665 355 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 VRTNQ9H8Y1 702 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 EFCC1Q9HA90 598 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 SLC6A14Q9UN76 642 aa8.36□□□□□ -1.07
SCFD1-219ENST00000556413 LILRB5O75023 590 aa8.35□□□□□ -1.07
SCFD1-219ENST00000556413 ARXQ96QS3 562 aa8.35□□□□□ -1.07
SCFD1-219ENST00000556413 GRIK4Q16099 956 aa8.34□□□□□ -1.07
SCFD1-219ENST00000556413 TRAPPC3LQ5T215 181 aa8.34□□□□□ -1.07
SCFD1-219ENST00000556413 Q8N3U1 123 aa8.34□□□□□ -1.07
SCFD1-219ENST00000556413 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-219ENST00000556413 GRNP28799 593 aaKnown RBP8.33□□□□□ -1.08
SCFD1-219ENST00000556413 CCINQ13939 588 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 RSPO4Q2I0M5 234 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-219ENST00000556413 NUDT8Q8WV74 236 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 PNMA5Q96PV4 448 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 NACC1Q96RE7 527 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 TPSG1Q9NRR2 321 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 DNAJB12Q9NXW2 375 aaKnown RBP8.33□□□□□ -1.08
SCFD1-219ENST00000556413 KLK14Q9P0G3 267 aa8.33□□□□□ -1.08
SCFD1-219ENST00000556413 NFKB1P19838 968 aa8.32□□□□□ -1.08
SCFD1-219ENST00000556413 WEE1P30291 646 aa8.32□□□□□ -1.08
SCFD1-219ENST00000556413 NKAPLQ5M9Q1 402 aa8.32□□□□□ -1.08
SCFD1-219ENST00000556413 JPH1Q9HDC5 661 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-219ENST00000556413 A0A0A0MRY4 1105 aa8.31□□□□□ -1.08
SCFD1-219ENST00000556413 INPP5BP32019 993 aa8.31□□□□□ -1.08
SCFD1-219ENST00000556413 CFAP70Q5T0N1 1121 aa8.31□□□□□ -1.08
SCFD1-219ENST00000556413 PSAPL1Q6NUJ1 521 aa8.31□□□□□ -1.08
SCFD1-219ENST00000556413 QTRT2Q9H974 415 aaKnown RBP8.31□□□□□ -1.08
SCFD1-219ENST00000556413 NAGPAQ9UK23 515 aa8.31□□□□□ -1.08
SCFD1-219ENST00000556413 EPB42P16452 691 aa8.3□□□□□ -1.08
SCFD1-219ENST00000556413 IDH3AP50213 366 aa8.3□□□□□ -1.08
SCFD1-219ENST00000556413 AFF1P51825 1210 aaKnown RBP8.3□□□□□ -1.08
SCFD1-219ENST00000556413 DGKZQ13574 1117 aa8.3□□□□□ -1.08
SCFD1-219ENST00000556413 FOXO3O43524 673 aa8.29□□□□□ -1.08
SCFD1-219ENST00000556413 SELPP16109 830 aa8.29□□□□□ -1.08
SCFD1-219ENST00000556413 ILDR2Q71H61 639 aa8.29□□□□□ -1.08
SCFD1-219ENST00000556413 C9orf172C9J069 976 aa8.28□□□□□ -1.08
SCFD1-219ENST00000556413 MICAL2O94851 1124 aa8.28□□□□□ -1.08
SCFD1-219ENST00000556413 ELNP15502 786 aa8.28□□□□□ -1.08
SCFD1-219ENST00000556413 ZFATQ9P243 1243 aa8.28□□□□□ -1.08
SCFD1-219ENST00000556413 ZNF777Q9ULD5 760 aaPredicted RBP8.28□□□□□ -1.08
SCFD1-219ENST00000556413 RGS9O75916 674 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-219ENST00000556413 MAP3K6O95382 1288 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 ARSDP51689 593 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 ADGRE1Q14246 886 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 C11orf91Q3C1V1 193 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 KRT25Q7Z3Z0 450 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 FAM35AQ86V20 835 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 FAM200AQ8TCP9 573 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 VTI1AQ96AJ9 217 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 MYO19Q96H55 970 aa8.27□□□□□ -1.09
SCFD1-219ENST00000556413 TARSP26639 723 aaKnown RBP8.26□□□□□ -1.09
SCFD1-219ENST00000556413 RAC1P63000 192 aa8.26□□□□□ -1.09
SCFD1-219ENST00000556413 MBTPS1Q14703 1052 aa8.26□□□□□ -1.09
SCFD1-219ENST00000556413 CDCA8Q53HL2 280 aa8.26□□□□□ -1.09
SCFD1-219ENST00000556413 SHISA2Q6UWI4 295 aa8.26□□□□□ -1.09
SCFD1-219ENST00000556413 DMRTC2Q8IXT2 367 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-219ENST00000556413 LENG1Q96BZ8 264 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-219ENST00000556413 IFT43Q96FT9 208 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms