RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 IER5Q5VY09 327 aa9.82□□□□□ -0.84
LINC00643-204ENST00000555934 NPAS4Q8IUM7 802 aa9.82□□□□□ -0.84
LINC00643-204ENST00000555934 RBCK1Q9BYM8 510 aa9.82□□□□□ -0.84
LINC00643-204ENST00000555934 H3BM21 787 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 THBS1P07996 1170 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 LORP23490 312 aaPredicted RBP9.81□□□□□ -0.84
LINC00643-204ENST00000555934 INPP5BP32019 993 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 ARSDP51689 593 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 TRIM22Q8IYM9 498 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 NUCKS1Q9H1E3 243 aaKnown RBP9.81□□□□□ -0.84
LINC00643-204ENST00000555934 GGNBP2Q9H3C7 697 aa9.81□□□□□ -0.84
LINC00643-204ENST00000555934 DCDC2BA2VCK2 349 aa9.8□□□□□ -0.84
LINC00643-204ENST00000555934 H7C1W4 665 aa9.8□□□□□ -0.84
LINC00643-204ENST00000555934 TYRO3Q06418 890 aa9.8□□□□□ -0.84
LINC00643-204ENST00000555934 DBN1Q16643 649 aa9.8□□□□□ -0.84
LINC00643-204ENST00000555934 PIK3R5Q8WYR1 880 aa9.8□□□□□ -0.84
LINC00643-204ENST00000555934 ZNF837Q96EG3 531 aaPredicted RBP9.8□□□□□ -0.84
LINC00643-204ENST00000555934 ZCCHC2Q9C0B9 1178 aaKnown RBP9.8□□□□□ -0.84
LINC00643-204ENST00000555934 RTCBQ9Y3I0 505 aaKnown RBP9.8□□□□□ -0.84
LINC00643-204ENST00000555934 CDC14CA4D256 554 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 GPR182O15218 404 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 PCSK2P16519 638 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 LBRQ14739 615 aaKnown RBP9.79□□□□□ -0.84
LINC00643-204ENST00000555934 NLRP8Q86W28 1048 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 TTC16Q8NEE8 873 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 GMCL1Q96IK5 515 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 BCL2L13Q9BXK5 485 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 BRD7Q9NPI1 651 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 FAM13BQ9NYF5 915 aa9.79□□□□□ -0.84
LINC00643-204ENST00000555934 KHNYNO15037 678 aaKnown RBP9.78□□□□□ -0.84
LINC00643-204ENST00000555934 ATXN7O15265 892 aaPredicted RBP9.78□□□□□ -0.84
LINC00643-204ENST00000555934 ERCC3P19447 782 aa9.78□□□□□ -0.84
LINC00643-204ENST00000555934 GJD3Q8N144 294 aa9.78□□□□□ -0.84
LINC00643-204ENST00000555934 NANOS1Q8WY41 292 aaKnown RBP9.78□□□□□ -0.84
LINC00643-204ENST00000555934 NIF3L1Q9GZT8 377 aa9.78□□□□□ -0.84
LINC00643-204ENST00000555934 GRNP28799 593 aaKnown RBP9.77□□□□□ -0.85
LINC00643-204ENST00000555934 MAPK8P45983 427 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 TAGLNQ01995 201 aaKnown RBP9.77□□□□□ -0.85
LINC00643-204ENST00000555934 TRIP4Q15650 581 aaPredicted RBP9.77□□□□□ -0.85
LINC00643-204ENST00000555934 VWA5B2Q8N398 1253 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 GIPC2Q8TF65 315 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 SLC16A10Q8TF71 515 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 CITED4Q96RK1 184 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 FAM129BQ96TA1 746 aa9.77□□□□□ -0.85
LINC00643-204ENST00000555934 UBAP1LF5GYI3 381 aa9.76□□□□□ -0.85
LINC00643-204ENST00000555934 P4HBP07237 508 aaKnown RBP9.76□□□□□ -0.85
LINC00643-204ENST00000555934 VSIG8P0DPA2 414 aa9.76□□□□□ -0.85
LINC00643-204ENST00000555934 USP5P45974 858 aa9.76□□□□□ -0.85
LINC00643-204ENST00000555934 SFSWAPQ12872 951 aaKnown RBP9.76□□□□□ -0.85
LINC00643-204ENST00000555934 PDE3BQ13370 1112 aa9.76□□□□□ -0.85
LINC00643-204ENST00000555934 GTPBP3Q969Y2 492 aaKnown RBP9.76□□□□□ -0.85
LINC00643-204ENST00000555934 KCNMB2Q9Y691 235 aa9.76□□□□□ -0.85
LINC00643-204ENST00000555934 TREHO43280 583 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 EPB42P16452 691 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 PLCB3Q01970 1234 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 GRIN2CQ14957 1233 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 SV2AQ7L0J3 742 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 ABHD17AQ96GS6 310 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 DMRTB1Q96MA1 342 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 PCDHGC4Q9Y5F7 938 aa9.75□□□□□ -0.85
LINC00643-204ENST00000555934 GPR25O00155 361 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 IGHA2P01877 340 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 GMPRP36959 345 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 EHHADHQ08426 723 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 UBAP2LQ14157 1087 aaKnown RBP9.74□□□□□ -0.85
LINC00643-204ENST00000555934 SAMD5Q5TGI4 173 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 FIGNL1Q6PIW4 674 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 KRT25Q7Z3Z0 450 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 STRN4Q9NRL3 753 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 AMOTL2Q9Y2J4 779 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 ERBB4Q15303 1308 aa9.74□□□□□ -0.85
LINC00643-204ENST00000555934 BNIP3LO60238 219 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 XYLBO75191 536 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 MAPTP10636 758 aaKnown RBP9.73□□□□□ -0.85
LINC00643-204ENST00000555934 ORC1Q13415 861 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 DSC3Q14574 896 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 EAPPQ56P03 285 aaPredicted RBP9.73□□□□□ -0.85
LINC00643-204ENST00000555934 ZNF438Q7Z4V0 828 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 KCNH4Q9UQ05 1017 aa9.73□□□□□ -0.85
LINC00643-204ENST00000555934 FAM181BA6NEQ2 426 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 FAM157BP0CG42 384 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 TNP2Q05952 138 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 IRF7Q92985 503 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 SETDB2Q96T68 719 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 FOXD3Q9UJU5 478 aaPredicted RBP9.72□□□□□ -0.85
LINC00643-204ENST00000555934 HCN2Q9UL51 889 aa9.72□□□□□ -0.85
LINC00643-204ENST00000555934 FNDC3AQ9Y2H6 1198 aaKnown RBP9.72□□□□□ -0.85
LINC00643-204ENST00000555934 EFSO43281 561 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 RPLP1P05386 114 aaKnown RBP9.71□□□□□ -0.86
LINC00643-204ENST00000555934 ZNF16P17020 682 aaPredicted RBP9.71□□□□□ -0.86
LINC00643-204ENST00000555934 CD33P20138 364 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 FMR1Q06787 632 aaKnown RBP eCLIP9.71□□□□□ -0.86
LINC00643-204ENST00000555934 FOXR1Q6PIV2 292 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 FBXO33Q7Z6M2 555 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 GPR161Q8N6U8 529 aaKnown RBP9.71□□□□□ -0.86
LINC00643-204ENST00000555934 TMEM63CQ9P1W3 806 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 WWC3Q9ULE0 1092 aa9.71□□□□□ -0.86
LINC00643-204ENST00000555934 PNMA6FA0A0J9YX94 578 aa9.7□□□□□ -0.86
LINC00643-204ENST00000555934 RBM47A0AV96 593 aaKnown RBP9.7□□□□□ -0.86
LINC00643-204ENST00000555934 UNCXA6NJT0 531 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms