RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 TRAK2O60296 914 aa8.93□□□□□ -0.98
SLIRP-204ENST00000555890 MTHFSP49914 203 aa8.93□□□□□ -0.98
SLIRP-204ENST00000555890 TGFB2P61812 414 aa8.93□□□□□ -0.98
SLIRP-204ENST00000555890 ACEP12821 1306 aa8.93□□□□□ -0.98
SLIRP-204ENST00000555890 PKD1L3Q7Z443 1732 aa8.93□□□□□ -0.98
SLIRP-204ENST00000555890 NHSQ6T4R5 1651 aa8.92□□□□□ -0.98
SLIRP-204ENST00000555890 USP6P35125 1406 aa8.92□□□□□ -0.98
SLIRP-204ENST00000555890 CPSF1Q10570 1443 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 EDC4Q6P2E9 1401 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 ITGBL1O95965 494 aaPredicted RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 PDIA4P13667 645 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 ERICH6BQ5W0A0 696 aa8.92□□□□□ -0.98
SLIRP-204ENST00000555890 CTU1Q7Z7A3 348 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 ALYREFQ86V81 257 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 PDCD7Q8N8D1 485 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 ABTB2Q8N961 1025 aa8.92□□□□□ -0.98
SLIRP-204ENST00000555890 GGNBP2Q9H3C7 697 aa8.92□□□□□ -0.98
SLIRP-204ENST00000555890 RBM27Q9P2N5 1060 aaKnown RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 SALL2Q9Y467 1007 aaPredicted RBP8.92□□□□□ -0.98
SLIRP-204ENST00000555890 BTAF1O14981 1849 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 WDR17Q8IZU2 1322 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 A0A0G2JLW4 131 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 G3V3G9 751 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 PTGDRQ13258 359 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 CYP4F22Q6NT55 531 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 TOM1L2Q6ZVM7 507 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 DDX12PQ92771 950 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 RNF166Q96A37 237 aaPredicted RBP8.91□□□□□ -0.98
SLIRP-204ENST00000555890 ACSBG1Q96GR2 724 aa8.91□□□□□ -0.98
SLIRP-204ENST00000555890 MAP2P11137 1827 aaKnown RBP8.91□□□□□ -0.98
SLIRP-204ENST00000555890 MKI67P46013 3256 aaKnown RBP8.9□□□□□ -0.98
SLIRP-204ENST00000555890 KAT6BQ8WYB5 2073 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 POTEB3A0JP26 581 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 EXOC5O00471 708 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 TBC1D12O60347 775 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 MS4A1P11836 297 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 POTEBQ6S5H4 581 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 LDHDQ86WU2 507 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.9□□□□□ -0.98
SLIRP-204ENST00000555890 OXER1Q8TDS5 423 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 SYMPKQ92797 1274 aaKnown RBP8.9□□□□□ -0.98
SLIRP-204ENST00000555890 CLUAP1Q96AJ1 413 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 CDCA7Q9BWT1 371 aaPredicted RBP8.9□□□□□ -0.98
SLIRP-204ENST00000555890 CARD10Q9BWT7 1032 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 BOLA1Q9Y3E2 137 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 RGPD5Q99666 1765 aa8.9□□□□□ -0.98
SLIRP-204ENST00000555890 RANBP2P49792 3224 aaKnown RBP8.9□□□□□ -0.98
SLIRP-204ENST00000555890 ZBTB7CA1YPR0 619 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 AOC2O75106 756 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 FOXK2Q01167 660 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 SH3D19Q5HYK7 790 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 CCDC82Q8N4S0 544 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 RUNDC1Q96C34 613 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 L3MBTL3Q96JM7 780 aaPredicted RBP8.89□□□□□ -0.99
SLIRP-204ENST00000555890 PNNQ9H307 717 aaKnown RBP8.89□□□□□ -0.99
SLIRP-204ENST00000555890 THSD7BQ9C0I4 1608 aa8.89□□□□□ -0.99
SLIRP-204ENST00000555890 H0YGN5 161 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 KCNQ4P56696 695 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 PKN2Q16513 984 aaKnown RBP8.88□□□□□ -0.99
SLIRP-204ENST00000555890 NPM2Q86SE8 214 aaKnown RBP8.88□□□□□ -0.99
SLIRP-204ENST00000555890 CCDC146Q8IYE0 955 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 FLAD1Q8NFF5 587 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 COG3Q96JB2 828 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 SLIT3O75094 1523 aa8.88□□□□□ -0.99
SLIRP-204ENST00000555890 APAF1O14727 1248 aa8.87□□□□□ -0.99
SLIRP-204ENST00000555890 U2AF1L5P0DN76 240 aaPredicted RBP8.87□□□□□ -0.99
SLIRP-204ENST00000555890 U2AF1Q01081 240 aaKnown RBP eCLIP8.87□□□□□ -0.99
SLIRP-204ENST00000555890 MCM6Q14566 821 aa8.87□□□□□ -0.99
SLIRP-204ENST00000555890 TNFRSF10AO00220 468 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 DIAPH1O60610 1272 aaKnown RBP8.86□□□□□ -0.99
SLIRP-204ENST00000555890 CLCN1P35523 988 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 ARHGEF25Q86VW2 580 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 NME9Q86XW9 330 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 DEFB123Q8N688 67 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 DCAF5Q96JK2 942 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 RCAN3Q9UKA8 241 aa8.86□□□□□ -0.99
SLIRP-204ENST00000555890 TTC21BQ7Z4L5 1316 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 TTC21AQ8NDW8 1320 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 CEP290O15078 2479 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 U2SURPO15042 1029 aaKnown RBP8.85□□□□□ -0.99
SLIRP-204ENST00000555890 EVI5O60447 810 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 PRIM1P49642 420 aaKnown RBP8.85□□□□□ -0.99
SLIRP-204ENST00000555890 CDCA7LQ96GN5 454 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 TMUB1Q9BVT8 246 aa8.85□□□□□ -0.99
SLIRP-204ENST00000555890 REPIN1Q9BWE0 567 aaKnown RBP8.85□□□□□ -0.99
SLIRP-204ENST00000555890 RNF123Q5XPI4 1314 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 ZNF521Q96K83 1311 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 COL3A1P02461 1466 aaPredicted RBP8.84□□□□□ -0.99
SLIRP-204ENST00000555890 E9PSI1 815 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 NEFMP07197 916 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 LMNB1P20700 586 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 SKIV2LQ15477 1246 aaKnown RBP8.84□□□□□ -0.99
SLIRP-204ENST00000555890 GPR153Q6NV75 609 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 LRCH3Q96II8 777 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 PPP4R2Q9NY27 417 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 POLKQ9UBT6 870 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 ABCC6O95255 1503 aa8.84□□□□□ -0.99
SLIRP-204ENST00000555890 MAPK8IP3Q9UPT6 1336 aa8.83□□□□□ -1
SLIRP-204ENST00000555890 PPM1GO15355 546 aaPredicted RBP8.83□□□□□ -1
SLIRP-204ENST00000555890 DPEP1P16444 411 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms