RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 GPC2Q8N158 579 aa15.04■□□□□ -0
VPS33B-204ENST00000554660 NGEFQ8N5V2 710 aa15.04■□□□□ -0
VPS33B-204ENST00000554660 GJA3Q9Y6H8 435 aa15.04■□□□□ -0
VPS33B-204ENST00000554660 RGL2O15211 777 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 HSPA8P11142 646 aaKnown RBP15.03■□□□□ -0
VPS33B-204ENST00000554660 ALDH1B1P30837 517 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 FMR1Q06787 632 aaKnown RBP eCLIP15.03■□□□□ -0
VPS33B-204ENST00000554660 DEFB115Q30KQ5 88 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 CRY2Q49AN0 593 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 JDP2Q8WYK2 163 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 TSHZ2Q9NRE2 1034 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 MIS18AQ9NYP9 233 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 KDM3BQ7LBC6 1761 aa15.03■□□□□ -0
VPS33B-204ENST00000554660 WDR33Q9C0J8 1336 aaKnown RBP15.02■□□□□ -0
VPS33B-204ENST00000554660 PSMD1Q99460 953 aa15.02■□□□□ -0
VPS33B-204ENST00000554660 PRKRIP1Q9H875 184 aaPredicted RBP15.02■□□□□ -0
VPS33B-204ENST00000554660 NUDCQ9Y266 331 aa15.02■□□□□ -0
VPS33B-204ENST00000554660 RIC1Q4ADV7 1423 aa15.01□□□□□ -0.01
VPS33B-204ENST00000554660 UBN2Q6ZU65 1347 aa15.01□□□□□ -0.01
VPS33B-204ENST00000554660 GPTP24298 496 aa15.01□□□□□ -0.01
VPS33B-204ENST00000554660 SCNN1DP51172 638 aa15.01□□□□□ -0.01
VPS33B-204ENST00000554660 DDX21Q9NR30 783 aaKnown RBP eCLIP15.01□□□□□ -0.01
VPS33B-204ENST00000554660 NUP98P52948 1817 aa15.01□□□□□ -0.01
VPS33B-204ENST00000554660 TCERG1O14776 1098 aaKnown RBP15□□□□□ -0.01
VPS33B-204ENST00000554660 LMOD1P29536 600 aaPredicted RBP15□□□□□ -0.01
VPS33B-204ENST00000554660 PPP2R1AP30153 589 aa15□□□□□ -0.01
VPS33B-204ENST00000554660 EIF6P56537 245 aaKnown RBP15□□□□□ -0.01
VPS33B-204ENST00000554660 GRM1Q13255 1194 aa15□□□□□ -0.01
VPS33B-204ENST00000554660 TTLL7Q6ZT98 887 aa15□□□□□ -0.01
VPS33B-204ENST00000554660 PAXIP1Q6ZW49 1069 aaPredicted RBP15□□□□□ -0.01
VPS33B-204ENST00000554660 RPGRQ92834 1020 aaKnown RBP15□□□□□ -0.01
VPS33B-204ENST00000554660 ABHD8Q96I13 439 aa15□□□□□ -0.01
VPS33B-204ENST00000554660 NYXQ9GZU5 481 aa15□□□□□ -0.01
VPS33B-204ENST00000554660 MAP3K15Q6ZN16 1313 aa14.99□□□□□ -0.01
VPS33B-204ENST00000554660 TRAF5O00463 557 aa14.99□□□□□ -0.01
VPS33B-204ENST00000554660 EPS15P42566 896 aa14.99□□□□□ -0.01
VPS33B-204ENST00000554660 MAP2K1Q02750 393 aaPredicted RBP14.99□□□□□ -0.01
VPS33B-204ENST00000554660 TAF7Q15545 349 aaPredicted RBP14.99□□□□□ -0.01
VPS33B-204ENST00000554660 LARGE2Q8N3Y3 721 aa14.99□□□□□ -0.01
VPS33B-204ENST00000554660 ZBTB3Q9H5J0 574 aa14.99□□□□□ -0.01
VPS33B-204ENST00000554660 IBTKQ9P2D0 1353 aaPredicted RBP14.98□□□□□ -0.01
VPS33B-204ENST00000554660 ZBED9Q6R2W3 1325 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 PPEF1O14829 653 aaPredicted RBP14.98□□□□□ -0.01
VPS33B-204ENST00000554660 HTATSF1O43719 755 aaKnown RBP14.98□□□□□ -0.01
VPS33B-204ENST00000554660 MYL6BP14649 208 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 KIF6Q6ZMV9 814 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 C3orf67Q6ZVT6 689 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 CAPNS2Q96L46 248 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 RRP7AQ9Y3A4 280 aaKnown RBP14.98□□□□□ -0.01
VPS33B-204ENST00000554660 DLG5Q8TDM6 1919 aa14.98□□□□□ -0.01
VPS33B-204ENST00000554660 ERVV-1B6SEH8 477 aa14.97□□□□□ -0.01
VPS33B-204ENST00000554660 FAM161AQ3B820 660 aa14.97□□□□□ -0.01
VPS33B-204ENST00000554660 SUSD4Q5VX71 490 aa14.97□□□□□ -0.01
VPS33B-204ENST00000554660 CC2D2BQ6DHV5 1058 aa14.97□□□□□ -0.01
VPS33B-204ENST00000554660 CYP4F22Q6NT55 531 aa14.97□□□□□ -0.01
VPS33B-204ENST00000554660 NTSR2O95665 410 aa14.96□□□□□ -0.01
VPS33B-204ENST00000554660 HOXA10P31260 410 aaPredicted RBP14.96□□□□□ -0.01
VPS33B-204ENST00000554660 NIM1KQ8IY84 436 aa14.96□□□□□ -0.01
VPS33B-204ENST00000554660 THUMPD2Q9BTF0 503 aaKnown RBP14.96□□□□□ -0.01
VPS33B-204ENST00000554660 TSKSQ9UJT2 592 aa14.96□□□□□ -0.01
VPS33B-204ENST00000554660 PPIP5K2O43314 1243 aa14.95□□□□□ -0.02
VPS33B-204ENST00000554660 HNRNPUQ00839 825 aaKnown RBP eCLIP14.95□□□□□ -0.02
VPS33B-204ENST00000554660 AOC3Q16853 763 aa14.95□□□□□ -0.02
VPS33B-204ENST00000554660 CST9Q5W186 159 aa14.95□□□□□ -0.02
VPS33B-204ENST00000554660 TRPM7Q96QT4 1865 aa14.95□□□□□ -0.02
VPS33B-204ENST00000554660 ECE1P42892 770 aa14.94□□□□□ -0.02
VPS33B-204ENST00000554660 EIF4A1P60842 406 aaKnown RBP14.94□□□□□ -0.02
VPS33B-204ENST00000554660 USP50Q70EL3 339 aaPredicted RBP14.94□□□□□ -0.02
VPS33B-204ENST00000554660 RBM17Q96I25 401 aaKnown RBP14.94□□□□□ -0.02
VPS33B-204ENST00000554660 GPR101Q96P66 508 aaPredicted RBP14.94□□□□□ -0.02
VPS33B-204ENST00000554660 AOC2O75106 756 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 ZNF34Q8IZ26 560 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 PNISRQ8TF01 805 aaKnown RBP14.93□□□□□ -0.02
VPS33B-204ENST00000554660 CRAMP1Q96RY5 1269 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 BEGAINQ9BUH8 593 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 GPRC5DQ9NZD1 345 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 TLL2Q9Y6L7 1015 aa14.93□□□□□ -0.02
VPS33B-204ENST00000554660 GRIPAP1Q4V328 841 aa14.92□□□□□ -0.02
VPS33B-204ENST00000554660 ABCC4O15439 1325 aa14.92□□□□□ -0.02
VPS33B-204ENST00000554660 LAMB2P55268 1798 aa14.91□□□□□ -0.02
VPS33B-204ENST00000554660 CCDC85CA6NKD9 419 aa14.91□□□□□ -0.02
VPS33B-204ENST00000554660 GIGYF2Q6Y7W6 1299 aaKnown RBP14.91□□□□□ -0.02
VPS33B-204ENST00000554660 ADARB2Q9NS39 739 aaKnown RBP14.91□□□□□ -0.02
VPS33B-204ENST00000554660 CELF2O95319 508 aaKnown RBP14.9□□□□□ -0.02
VPS33B-204ENST00000554660 SLC34A2O95436 690 aa14.9□□□□□ -0.02
VPS33B-204ENST00000554660 NEFMP07197 916 aa14.9□□□□□ -0.02
VPS33B-204ENST00000554660 GMPSP49915 693 aaPredicted RBP14.9□□□□□ -0.02
VPS33B-204ENST00000554660 CXCL9Q07325 125 aa14.9□□□□□ -0.02
VPS33B-204ENST00000554660 PPP1R42Q7Z4L9 355 aa14.9□□□□□ -0.02
VPS33B-204ENST00000554660 GLIS2Q9BZE0 524 aaPredicted RBP14.9□□□□□ -0.02
VPS33B-204ENST00000554660 ATP6V0A2Q9Y487 856 aa14.9□□□□□ -0.02
VPS33B-204ENST00000554660 ANKRD36CQ5JPF3 1778 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 ANXA1P04083 346 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 NFE2L2Q16236 605 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 PARP10Q53GL7 1025 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 SAPCD2Q86UD0 394 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 NLRP3Q96P20 1036 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 PLEKHF1Q96S99 279 aa14.89□□□□□ -0.03
VPS33B-204ENST00000554660 TMX4Q9H1E5 349 aaPredicted RBP14.89□□□□□ -0.03
VPS33B-204ENST00000554660 ZNF408Q9H9D4 720 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms