RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 UBE3BQ7Z3V4 1068 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZSCAN29Q8IWY8 852 aaPredicted RBP17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 IFNL2Q8IZJ0 200 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 SNX21Q969T3 373 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 IFIT3O14879 490 aaKnown RBP17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 UVSSAQ2YD98 709 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 CCDC191Q8NCU4 936 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 USP5P45974 858 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 SSRP1Q08945 709 aaKnown RBP17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 TMCO3Q6UWJ1 677 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 IQCA1Q86XH1 822 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 CCDC82Q8N4S0 544 aa17.81■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZNF397Q8NF99 534 aaPredicted RBP17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 PPP1R1BQ9UD71 204 aaPredicted RBP17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 STX1AQ16623 288 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 CNNM3Q8NE01 707 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 CCDC148Q8NFR7 591 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 ANAPC15P60006 121 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 ESYT1Q9BSJ8 1104 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 CWC25Q9NXE8 425 aaPredicted RBP17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 ANXA1P04083 346 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 MKNK2Q9HBH9 465 aa17.8■□□□□ 0.44
ARHGEF40-202ENST00000553709 ATP5J2-PTCD1G3V325 749 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZSCAN22P10073 491 aaPredicted RBP17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 SEC63Q9UGP8 760 aaKnown RBP17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 RANBP6O60518 1105 aaKnown RBP17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 USP16Q9Y5T5 823 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 TNNT1P13805 278 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 CCDC102AQ96A19 550 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 TNNQ9UQP3 1299 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 DMRT2Q9Y5R5 561 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 RLBP1P12271 317 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZNF165P49910 485 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 LRSAM1Q6UWE0 723 aa17.79■□□□□ 0.44
ARHGEF40-202ENST00000553709 URI1O94763 535 aaPredicted RBP17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 POLR3DP05423 398 aaPredicted RBP17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZNF76P36508 570 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 GSDMDP57764 484 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 FAM193AP78312 1265 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 TTF1Q15361 905 aaPredicted RBP17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 ZFYVE9O95405 1425 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 KDM5AP29375 1690 aaKnown RBP17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 KIF5CO60282 957 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 CAVIN2O95810 425 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 ATP8B2P98198 1209 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 KRT28Q7Z3Y7 464 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 GBP3Q9H0R5 595 aa17.78■□□□□ 0.44
ARHGEF40-202ENST00000553709 ANKRD24Q8TF21 1146 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 CHPF2Q9P2E5 772 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 POLKQ9UBT6 870 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 C16orf45Q96MC5 204 aaPredicted RBP17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 SNRKQ9NRH2 765 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 ORC3Q9UBD5 711 aaPredicted RBP17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 KIAA0754O94854 1291 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 SNRPA1P09661 255 aaKnown RBP17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 TAF4BQ92750 862 aa17.77■□□□□ 0.44
ARHGEF40-202ENST00000553709 SEPT11Q9NVA2 429 aaKnown RBP17.77■□□□□ 0.43
ARHGEF40-202ENST00000553709 IARSP41252 1262 aaKnown RBP17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 LDHAL6AQ6ZMR3 332 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 ZSCAN16Q9H4T2 348 aaPredicted RBP17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 GPTP24298 496 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 SPA17Q15506 151 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 CADPS2Q86UW7 1296 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 DZIP1Q86YF9 867 aaKnown RBP17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 CENPHQ9H3R5 247 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 CASQ1P31415 396 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 ANKRD13DQ6ZTN6 518 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 ARHGAP31Q2M1Z3 1444 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 HCLS1P14317 486 aaPredicted RBP17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 FKBP15Q5T1M5 1219 aa17.76■□□□□ 0.43
ARHGEF40-202ENST00000553709 BIN1O00499 593 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 TRMT1Q9NXH9 659 aaKnown RBP17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 ERVK-7P63135 1459 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 KCNA6P17658 529 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 HAND2P61296 217 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 EIF4A2Q14240 407 aaKnown RBP17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 NCOA7Q8NI08 942 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 TEX13AQ9BXU3 409 aaPredicted RBP17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 VAMP4O75379 141 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 C16orf71Q8IYS4 520 aaPredicted RBP17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 CNKSR2Q8WXI2 1034 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 SIRT1Q96EB6 747 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 KIF4BQ2VIQ3 1234 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 CATIPQ7Z7H3 387 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 NECAB1Q8N987 351 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 TMEM67Q5HYA8 995 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 BRF1Q92994 677 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 DCTPP1Q9H773 170 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 ZBTB40Q9NUA8 1239 aa17.75■□□□□ 0.43
ARHGEF40-202ENST00000553709 ZPR1O75312 459 aa17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 ALDH1L1O75891 902 aa17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 XRCC6P12956 609 aaKnown RBP eCLIP17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 GIMAP6Q6P9H5 292 aa17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 SMC5Q8IY18 1101 aa17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 TMC6Q7Z403 805 aa17.74■□□□□ 0.43
ARHGEF40-202ENST00000553709 CCDC194A0A1B0GVG4 234 aa17.73■□□□□ 0.43
ARHGEF40-202ENST00000553709 NLRP5P59047 1200 aa17.73■□□□□ 0.43
ARHGEF40-202ENST00000553709 WWC2Q6AWC2 1192 aa17.73■□□□□ 0.43
ARHGEF40-202ENST00000553709 DDX46Q7L014 1031 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms