RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 UBN2Q6ZU65 1347 aa16.63■□□□□ 0.25
LINC00643-202ENST00000553426 DDNO94850 711 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-202ENST00000553426 AIMP1Q12904 312 aaKnown RBP16.62■□□□□ 0.25
LINC00643-202ENST00000553426 PDIA6Q15084 440 aa16.62■□□□□ 0.25
LINC00643-202ENST00000553426 NLRP3Q96P20 1036 aa16.62■□□□□ 0.25
LINC00643-202ENST00000553426 UTP14AQ9BVJ6 771 aaKnown RBP16.62■□□□□ 0.25
LINC00643-202ENST00000553426 ZNF277Q9NRM2 450 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-202ENST00000553426 ABCC12Q96J65 1359 aa16.62■□□□□ 0.25
LINC00643-202ENST00000553426 RIC1Q4ADV7 1423 aa16.62■□□□□ 0.25
LINC00643-202ENST00000553426 NTSR2O95665 410 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 ANXA1P04083 346 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 HOXA10P31260 410 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-202ENST00000553426 PROSER3Q2NL68 480 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 COPS6Q7L5N1 327 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 SYNE4Q8N205 404 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 JDP2Q8WYK2 163 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 TRIM35Q9UPQ4 493 aa16.61■□□□□ 0.25
LINC00643-202ENST00000553426 POTECB2RU33 542 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 IARSP41252 1262 aaKnown RBP16.6■□□□□ 0.25
LINC00643-202ENST00000553426 OLFM4Q6UX06 510 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 LRP10Q7Z4F1 713 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 XAGE3Q8WTP9 111 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 CRAMP1Q96RY5 1269 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 PSMD1Q99460 953 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 DDX21Q9NR30 783 aaKnown RBP eCLIP16.6■□□□□ 0.25
LINC00643-202ENST00000553426 RNF123Q5XPI4 1314 aa16.6■□□□□ 0.25
LINC00643-202ENST00000553426 HOXB7P09629 217 aa16.59■□□□□ 0.25
LINC00643-202ENST00000553426 CALD1Q05682 793 aaKnown RBP16.59■□□□□ 0.25
LINC00643-202ENST00000553426 HDGFL1Q5TGJ6 251 aa16.59■□□□□ 0.25
LINC00643-202ENST00000553426 CFAP44Q96MT7 982 aa16.59■□□□□ 0.25
LINC00643-202ENST00000553426 PPEF1O14829 653 aaPredicted RBP16.58■□□□□ 0.24
LINC00643-202ENST00000553426 CHADLQ6NUI6 762 aa16.58■□□□□ 0.24
LINC00643-202ENST00000553426 L3MBTL3Q96JM7 780 aaPredicted RBP16.58■□□□□ 0.24
LINC00643-202ENST00000553426 TCIRG1Q13488 830 aa16.57■□□□□ 0.24
LINC00643-202ENST00000553426 SLC10A5Q5PT55 438 aa16.57■□□□□ 0.24
LINC00643-202ENST00000553426 CHPF2Q9P2E5 772 aa16.57■□□□□ 0.24
LINC00643-202ENST00000553426 DBF4Q9UBU7 674 aaPredicted RBP16.57■□□□□ 0.24
LINC00643-202ENST00000553426 TRMT112Q9UI30 125 aaKnown RBP16.57■□□□□ 0.24
LINC00643-202ENST00000553426 TCERG1O14776 1098 aaKnown RBP16.56■□□□□ 0.24
LINC00643-202ENST00000553426 HSPA1AP0DMV8 641 aaKnown RBP16.56■□□□□ 0.24
LINC00643-202ENST00000553426 HSPA1BP0DMV9 641 aaKnown RBP16.56■□□□□ 0.24
LINC00643-202ENST00000553426 EIF6P56537 245 aaKnown RBP16.56■□□□□ 0.24
LINC00643-202ENST00000553426 KRT24Q2M2I5 525 aa16.56■□□□□ 0.24
LINC00643-202ENST00000553426 NLRP10Q86W26 655 aa16.56■□□□□ 0.24
LINC00643-202ENST00000553426 HACL1Q9UJ83 578 aa16.56■□□□□ 0.24
LINC00643-202ENST00000553426 FZD9O00144 591 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 APAF1O14727 1248 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 GNAI1P63096 354 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 ANKRD13DQ6ZTN6 518 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 LDHDQ86WU2 507 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 GPC2Q8N158 579 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 LARGE2Q8N3Y3 721 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 HYPKQ9NX55 129 aa16.55■□□□□ 0.24
LINC00643-202ENST00000553426 SH3TC1Q8TE82 1336 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 ZNF541Q9H0D2 1346 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 BBOX1O75936 387 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 DUSP27Q5VZP5 1158 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 DDX46Q7L014 1031 aaKnown RBP16.54■□□□□ 0.24
LINC00643-202ENST00000553426 PLBD2Q8NHP8 589 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 CHMP4AQ9BY43 222 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 TAF1DQ9H5J8 278 aaPredicted RBP16.54■□□□□ 0.24
LINC00643-202ENST00000553426 MBIPQ9NS73 344 aa16.54■□□□□ 0.24
LINC00643-202ENST00000553426 ZEB1P37275 1124 aaPredicted RBP16.53■□□□□ 0.24
LINC00643-202ENST00000553426 EAPPQ56P03 285 aaPredicted RBP16.53■□□□□ 0.24
LINC00643-202ENST00000553426 C3orf67Q6ZVT6 689 aa16.53■□□□□ 0.24
LINC00643-202ENST00000553426 PNMA8AQ86V59 439 aaPredicted RBP16.53■□□□□ 0.24
LINC00643-202ENST00000553426 SUPT20HQ8NEM7 779 aa16.53■□□□□ 0.24
LINC00643-202ENST00000553426 IFT57Q9NWB7 429 aa16.53■□□□□ 0.24
LINC00643-202ENST00000553426 CLEC11AQ9Y240 323 aa16.53■□□□□ 0.24
LINC00643-202ENST00000553426 ATP6V0A2Q9Y487 856 aa16.53■□□□□ 0.24
LINC00643-202ENST00000553426 SCN4AP35499 1836 aa16.52■□□□□ 0.24
LINC00643-202ENST00000553426 HCLS1P14317 486 aaPredicted RBP16.52■□□□□ 0.24
LINC00643-202ENST00000553426 LMOD1P29536 600 aaPredicted RBP16.52■□□□□ 0.24
LINC00643-202ENST00000553426 EPHX2P34913 555 aa16.52■□□□□ 0.24
LINC00643-202ENST00000553426 NIM1KQ8IY84 436 aa16.52■□□□□ 0.24
LINC00643-202ENST00000553426 VPS33BQ9H267 617 aa16.52■□□□□ 0.24
LINC00643-202ENST00000553426 GJA3Q9Y6H8 435 aa16.52■□□□□ 0.24
LINC00643-202ENST00000553426 ABCC4O15439 1325 aa16.51■□□□□ 0.23
LINC00643-202ENST00000553426 PPIP5K2O43314 1243 aa16.51■□□□□ 0.23
LINC00643-202ENST00000553426 POTEIP0CG38 1075 aa16.51■□□□□ 0.23
LINC00643-202ENST00000553426 POTEJP0CG39 1038 aa16.51■□□□□ 0.23
LINC00643-202ENST00000553426 SNED1Q8TER0 1413 aa16.51■□□□□ 0.23
LINC00643-202ENST00000553426 ZNF853P0CG23 659 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 GOLGA2Q08379 1002 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 TMC4Q7Z404 712 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 SP8Q8IXZ3 490 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 CREBZFQ9NS37 354 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 ANKRD36CQ5JPF3 1778 aa16.5■□□□□ 0.23
LINC00643-202ENST00000553426 HSP90B1P14625 803 aaKnown RBP16.49■□□□□ 0.23
LINC00643-202ENST00000553426 GRAPQ13588 217 aa16.49■□□□□ 0.23
LINC00643-202ENST00000553426 DPP8Q6V1X1 898 aaPredicted RBP16.49■□□□□ 0.23
LINC00643-202ENST00000553426 RIC3Q7Z5B4 369 aa16.49■□□□□ 0.23
LINC00643-202ENST00000553426 MPNDQ8N594 471 aa16.49■□□□□ 0.23
LINC00643-202ENST00000553426 GRAPLQ8TC17 118 aaPredicted RBP16.49■□□□□ 0.23
LINC00643-202ENST00000553426 ATP5J2-PTCD1G3V325 749 aa16.48■□□□□ 0.23
LINC00643-202ENST00000553426 ELL2O00472 640 aaPredicted RBP16.48■□□□□ 0.23
LINC00643-202ENST00000553426 ISCA1Q9BUE6 129 aa16.48■□□□□ 0.23
LINC00643-202ENST00000553426 FAM89AQ96GI7 184 aa16.47■□□□□ 0.23
LINC00643-202ENST00000553426 RTFDC1Q9BY42 306 aaPredicted RBP16.47■□□□□ 0.23
LINC00643-202ENST00000553426 DDX58O95786 925 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms