RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	ADCY5	O95622	1261 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	BAG3	O95817	575 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	CETN1	Q12798	172 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	MFSD6	Q6ZSS7	791 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	KRT28	Q7Z3Y7	464 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	LUZP1	Q86V48	1076 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	EXOC5	O00471	708 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	CCDC96	Q2M329	555 aa		13.31	□□□□□ -0.28
SYNE2-208	ENST00000553289	STXBP4	Q6ZWJ1	553 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	TMTC2	Q8N394	836 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	RPGR	Q92834	1020 aa	Known RBP	13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	TMX3	Q96JJ7	454 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	INCENP	Q9NQS7	918 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	LRSAM1	Q6UWE0	723 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	PRIMPOL	Q96LW4	560 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	CCDC91	Q7Z6B0	441 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	EHBP1	Q8NDI1	1231 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	ZBTB3	Q9H5J0	574 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	RMND1	Q9NWS8	449 aa		13.3	□□□□□ -0.28
SYNE2-208	ENST00000553289	SDS	P20132	328 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	SSR1	P43307	286 aa	Known RBP	13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	UBE3B	Q7Z3V4	1068 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	SKAP1	Q86WV1	359 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	PAXBP1	Q9Y5B6	917 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	RAPGEF6	Q8TEU7	1601 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	MTIF2	P46199	727 aa	Known RBP	13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	ANKRD13D	Q6ZTN6	518 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	TMC6	Q7Z403	805 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	KRT23	Q9C075	422 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	PDE1A	P54750	535 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	KCNG4	Q8TDN1	519 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	FAM107B	Q9H098	131 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	TFIP11	Q9UBB9	837 aa	Known RBP	13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	PRAG1	Q86YV5	1406 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	ANKRD24	Q8TF21	1146 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	CNNM2	Q9H8M5	875 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	CCDC171	Q6TFL3	1326 aa		13.29	□□□□□ -0.28
SYNE2-208	ENST00000553289	URB2	Q14146	1524 aa	Known RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	NEBL	O76041	1014 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	ATP8B2	P98198	1209 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	ESYT1	Q9BSJ8	1104 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	KAT14	Q9H8E8	782 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	ZSCAN23	Q3MJ62	389 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	TDRD12	Q587J7	1177 aa	Known RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	SOS1	Q07889	1333 aa	Predicted RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	UBA7	P41226	1012 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	RBM25	P49756	843 aa	Known RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	PPP4R3B	Q5MIZ7	849 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	MRPL50	Q8N5N7	158 aa	Known RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	PLCH2	O75038	1416 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	TNR	Q92752	1358 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	MYZAP	P0CAP1	466 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	GSTO1	P78417	241 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	CCDC82	Q8N4S0	544 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	TAOK3	Q9H2K8	898 aa		13.28	□□□□□ -0.28
SYNE2-208	ENST00000553289	FAM83G	A6ND36	823 aa		13.27	□□□□□ -0.28
SYNE2-208	ENST00000553289	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.27	□□□□□ -0.28
SYNE2-208	ENST00000553289	SNW1	Q13573	536 aa	Known RBP	13.27	□□□□□ -0.28
SYNE2-208	ENST00000553289	TUBB4A	P04350	444 aa		13.27	□□□□□ -0.28
SYNE2-208	ENST00000553289	PIK3C2G	O75747	1445 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	PRKCSH	P14314	528 aa	Predicted RBP	13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	MICALCL	Q6ZW33	695 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	DYDC1	Q8WWB3	177 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	CTAGE1	Q96RT6	745 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	UBA5	Q9GZZ9	404 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	TTC41P	Q6P2S7	1318 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	TSPY2	A6NKD2	308 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	TRAF1	Q13077	416 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	C16orf45	Q96MC5	204 aa	Predicted RBP	13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	GDPD2	Q9HCC8	539 aa		13.27	□□□□□ -0.29
SYNE2-208	ENST00000553289	CADPS2	Q86UW7	1296 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	ZFYVE9	O95405	1425 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	SPAG1	Q07617	926 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	MICU3	Q86XE3	530 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	MEIS3	Q99687	375 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	MAPKBP1	O60336	1514 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	DYNC1I1	O14576	645 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	IFFO1	Q0D2I5	559 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	CCDC152	Q4G0S7	254 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	CCDC40	Q4G0X9	1142 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	AKAP4	Q5JQC9	854 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	DDX46	Q7L014	1031 aa	Known RBP	13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	SLC26A6	Q9BXS9	759 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	GPT	P24298	496 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	IL15	P40933	162 aa	Predicted RBP	13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	SYK	P43405	635 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	MAP2K1	Q02750	393 aa	Predicted RBP	13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	IFI16	Q16666	785 aa	Known RBP	13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	PCDHB15	Q9Y5E8	787 aa		13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
SYNE2-208	ENST00000553289	WTAP	Q15007	396 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	MCMDC2	Q4G0Z9	681 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	KSR2	Q6VAB6	950 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	PPIP5K1	Q6PFW1	1433 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	HLA-DOA	P06340	250 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	BRF1	Q92994	677 aa		13.25	□□□□□ -0.29
SYNE2-208	ENST00000553289	TRMT1	Q9NXH9	659 aa	Known RBP	13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 62 ms