RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 C10orf71Q711Q0 1435 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 ERBB4Q15303 1308 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 CARMIL3Q8ND23 1372 aa9.49□□□□□ -0.89
LIMA1-216ENST00000552909 KIF13BQ9NQT8 1826 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 HOXB7P09629 217 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 KCNA3P22001 575 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 RBM10P98175 930 aaKnown RBP9.48□□□□□ -0.89
LIMA1-216ENST00000552909 CLEC4GQ6UXB4 293 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 XAGE3Q8WTP9 111 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 SETDB2Q96T68 719 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 DDX21Q9NR30 783 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMA1-216ENST00000552909 PRDM4Q9UKN5 801 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 IL16Q14005 1332 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 MAP3K15Q6ZN16 1313 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 NUP98P52948 1817 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 PXDNLA1KZ92 1463 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 FAM177BA6PVY3 158 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 SEC24BO95487 1268 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 DPEP1P16444 411 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 CHRNA5P30532 468 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 GPR162Q16538 588 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 NIP7Q9Y221 180 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMA1-216ENST00000552909 KIAA1551Q9HCM1 1747 aa9.48□□□□□ -0.89
LIMA1-216ENST00000552909 ERVV-1B6SEH8 477 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 TGFB2P61812 414 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 PRR5LQ6MZQ0 368 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 PHAXQ9H814 394 aaKnown RBP9.47□□□□□ -0.89
LIMA1-216ENST00000552909 NRXN2Q9P2S2 1712 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 GPTP24298 496 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 KIF6Q6ZMV9 814 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 ZNF428Q96B54 188 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 TBC1D2Q9BYX2 928 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 DBF4Q9UBU7 674 aaPredicted RBP9.47□□□□□ -0.89
LIMA1-216ENST00000552909 ZNF652Q9Y2D9 606 aa9.47□□□□□ -0.89
LIMA1-216ENST00000552909 A0A0U1RQG5 324 aaPredicted RBP9.46□□□□□ -0.89
LIMA1-216ENST00000552909 EXOSC9Q06265 439 aaKnown RBP9.46□□□□□ -0.89
LIMA1-216ENST00000552909 TWISTNBQ3B726 338 aaPredicted RBP9.46□□□□□ -0.89
LIMA1-216ENST00000552909 GIGYF2Q6Y7W6 1299 aaKnown RBP9.46□□□□□ -0.89
LIMA1-216ENST00000552909 KIAA1211Q6ZU35 1233 aa9.46□□□□□ -0.89
LIMA1-216ENST00000552909 UBN2Q6ZU65 1347 aa9.46□□□□□ -0.9
LIMA1-216ENST00000552909 NBPF5PQ86XG9 351 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-216ENST00000552909 DCAF8L1A6NGE4 600 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 DDX11L8A8MPP1 907 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 BCAR3O75815 825 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 NUTM1Q86Y26 1132 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 ZNF34Q8IZ26 560 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 CNBD1Q8NA66 436 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 TBC1D32Q96NH3 1257 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 MAP7D2Q96T17 732 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 CHMP5Q9NZZ3 219 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 ANKRD31Q8N7Z5 1873 aa9.45□□□□□ -0.9
LIMA1-216ENST00000552909 NPHP1O15259 732 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 VAMP4O75379 141 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 AAMPQ13685 434 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 CCDC30Q5VVM6 783 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 SUSD4Q5VX71 490 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 ANKRD13DQ6ZTN6 518 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 HYPKQ9NX55 129 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 BRCA1P38398 1863 aaKnown RBP9.44□□□□□ -0.9
LIMA1-216ENST00000552909 RGL2O15211 777 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 G2E3Q7L622 706 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 BRIP1Q9BX63 1249 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 BCS1LQ9Y276 419 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 ATP10DQ9P241 1426 aa9.44□□□□□ -0.9
LIMA1-216ENST00000552909 IGHDP01880 384 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 TPTE2Q6XPS3 522 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 SYNE4Q8N205 404 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 ATP5J2-PTCD1G3V325 749 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 SLC4A2P04920 1241 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 RARSP54136 660 aaKnown RBP9.43□□□□□ -0.9
LIMA1-216ENST00000552909 TERF1P54274 439 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 TCIRG1Q13488 830 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 ERFEQ4G0M1 354 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 C2CD5Q86YS7 1000 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 PLBD2Q8NHP8 589 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 PIM2Q9P1W9 311 aa9.43□□□□□ -0.9
LIMA1-216ENST00000552909 NTSR2O95665 410 aa9.42□□□□□ -0.9
LIMA1-216ENST00000552909 ST5P78524 1137 aa9.42□□□□□ -0.9
LIMA1-216ENST00000552909 SPRYD3Q8NCJ5 442 aa9.42□□□□□ -0.9
LIMA1-216ENST00000552909 BCL2L13Q9BXK5 485 aa9.42□□□□□ -0.9
LIMA1-216ENST00000552909 ABCC12Q96J65 1359 aa9.42□□□□□ -0.9
LIMA1-216ENST00000552909 H0YIN7 160 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 SRGNP10124 158 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 GTF2E1P29083 439 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-216ENST00000552909 PDE6BP35913 854 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-216ENST00000552909 NLRP10Q86W26 655 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 COL11A2P13942 1736 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-216ENST00000552909 GRIN3BO60391 1043 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 OFD1O75665 1012 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 CT47B1P0C2W7 299 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-216ENST00000552909 DALRD3Q5D0E6 543 aaKnown RBP9.41□□□□□ -0.9
LIMA1-216ENST00000552909 C3orf67Q6ZVT6 689 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 RIC3Q7Z5B4 369 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 ZNF622Q969S3 477 aaKnown RBP eCLIP9.41□□□□□ -0.96e-8■□□□□ 9.1
LIMA1-216ENST00000552909 STK31Q9BXU1 1019 aa9.41□□□□□ -0.9
LIMA1-216ENST00000552909 CHD4Q14839 1912 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 KLRG2A4D1S0 409 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-216ENST00000552909 PI4KAP2A4QPH2 592 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 CCDC173Q0VFZ6 552 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms