RNA–Protein interactions for RNA: ENST00000552773.1

RFX4-210, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 1,659 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-210ENST00000552773 SNX14Q9Y5W7 946 aa12.5□□□□□ -0.41
RFX4-210ENST00000552773 C5P01031 1676 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 A0A087WZG4 1122 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 CABLES1Q8TDN4 633 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 TRIM44Q96DX7 344 aaPredicted RBP12.49□□□□□ -0.41
RFX4-210ENST00000552773 FSD1Q9BTV5 496 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 ALDH8A1Q9H2A2 487 aaPredicted RBP12.49□□□□□ -0.41
RFX4-210ENST00000552773 USP16Q9Y5T5 823 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 CCDC171Q6TFL3 1326 aa12.49□□□□□ -0.41
RFX4-210ENST00000552773 COL5A2P05997 1499 aaPredicted RBP12.49□□□□□ -0.41
RFX4-210ENST00000552773 PRAMEF22A3QJZ6 481 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 SASH1O94885 1247 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 LETM1O95202 739 aaPredicted RBP12.48□□□□□ -0.41
RFX4-210ENST00000552773 XRCC6P12956 609 aaKnown RBP eCLIP12.48□□□□□ -0.41
RFX4-210ENST00000552773 PDCP20941 246 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 IL15P40933 162 aaPredicted RBP12.48□□□□□ -0.41
RFX4-210ENST00000552773 LRP10Q7Z4F1 713 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 EAF2Q96CJ1 260 aaPredicted RBP12.48□□□□□ -0.41
RFX4-210ENST00000552773 KAZALD1Q96I82 304 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 ZSWIM6Q9HCJ5 1215 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 PDRG1Q9NUG6 133 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 LMBRD1Q9NUN5 540 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 BRPF3Q9ULD4 1205 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 PALD1Q9ULE6 856 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 PA2G4Q9UQ80 394 aaKnown RBP12.48□□□□□ -0.41
RFX4-210ENST00000552773 SMC3Q9UQE7 1217 aa12.48□□□□□ -0.41
RFX4-210ENST00000552773 H7C1W4 665 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 CIAO1O76071 339 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 STARD3NLO95772 234 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 CCDC173Q0VFZ6 552 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 TSGA10IPQ3SY00 556 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 HSP90AB3PQ58FF7 597 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 TNNI3KQ59H18 835 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 UBE3BQ7Z3V4 1068 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 ZGPATQ8N5A5 531 aaKnown RBP12.47□□□□□ -0.41
RFX4-210ENST00000552773 MAP4K1Q92918 833 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 FPGT-TNNI3KV9GXZ4 949 aa12.47□□□□□ -0.41
RFX4-210ENST00000552773 MAP4K4O95819 1239 aaPredicted RBP12.46□□□□□ -0.41
RFX4-210ENST00000552773 HMGB1P09429 215 aaKnown RBP12.46□□□□□ -0.41
RFX4-210ENST00000552773 CASTP20810 708 aaKnown RBP12.46□□□□□ -0.41
RFX4-210ENST00000552773 RUFY3Q7L099 469 aa12.46□□□□□ -0.41
RFX4-210ENST00000552773 TTC14Q96N46 770 aa12.46□□□□□ -0.41
RFX4-210ENST00000552773 TMOD3Q9NYL9 352 aa12.46□□□□□ -0.41
RFX4-210ENST00000552773 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
RFX4-210ENST00000552773 U3KPZ7 1027 aaPredicted RBP12.46□□□□□ -0.41
RFX4-210ENST00000552773 ARFGEF2Q9Y6D5 1785 aa12.46□□□□□ -0.42
RFX4-210ENST00000552773 TRIM28Q13263 835 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 NECTIN1Q15223 517 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 KIF6Q6ZMV9 814 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.45□□□□□ -0.42
RFX4-210ENST00000552773 DDX17Q92841 729 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 UPF3BQ9BZI7 483 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 UBR2Q8IWV8 1755 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 TNS2Q63HR2 1409 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 AFDNP55196 1824 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 PRPF40AO75400 957 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 PTPN12Q05209 780 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 BLOC1S2Q6QNY1 142 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 JAKMIP1Q96N16 626 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 CDCA7Q9BWT1 371 aaPredicted RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 CCDC8Q9H0W5 538 aaPredicted RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 KIF3AQ9Y496 699 aa12.45□□□□□ -0.42
RFX4-210ENST00000552773 RBM8AQ9Y5S9 174 aaKnown RBP12.45□□□□□ -0.42
RFX4-210ENST00000552773 XIRP1Q702N8 1843 aaKnown RBP12.44□□□□□ -0.42
RFX4-210ENST00000552773 RFX5P48382 616 aaPredicted RBP12.44□□□□□ -0.42
RFX4-210ENST00000552773 AK2P54819 239 aa12.44□□□□□ -0.42
RFX4-210ENST00000552773 CREB3L3Q68CJ9 461 aa12.44□□□□□ -0.42
RFX4-210ENST00000552773 PRPF40BQ6NWY9 871 aaKnown RBP12.44□□□□□ -0.42
RFX4-210ENST00000552773 HAUS7Q99871 368 aa12.44□□□□□ -0.42
RFX4-210ENST00000552773 SIL1Q9H173 461 aa12.44□□□□□ -0.42
RFX4-210ENST00000552773 BOLA2Q9H3K6 86 aa12.44□□□□□ -0.42
RFX4-210ENST00000552773 PAPPAQ13219 1627 aa12.43□□□□□ -0.42
RFX4-210ENST00000552773 ZSCAN22P10073 491 aaPredicted RBP12.43□□□□□ -0.42
RFX4-210ENST00000552773 HSP90B1P14625 803 aaKnown RBP12.43□□□□□ -0.42
RFX4-210ENST00000552773 NASPP49321 788 aaPredicted RBP12.43□□□□□ -0.42
RFX4-210ENST00000552773 HSPA2P54652 639 aa12.43□□□□□ -0.42
RFX4-210ENST00000552773 NMIQ13287 307 aaPredicted RBP12.43□□□□□ -0.42
RFX4-210ENST00000552773 TMEM87AQ8NBN3 555 aa12.43□□□□□ -0.42
RFX4-210ENST00000552773 HELLSQ9NRZ9 838 aa12.43□□□□□ -0.42
RFX4-210ENST00000552773 ABCC12Q96J65 1359 aa12.43□□□□□ -0.42
RFX4-210ENST00000552773 STX6O43752 255 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 CASP7P55210 303 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 MCMDC2Q4G0Z9 681 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 NHSL1Q5SYE7 1610 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 CAVIN1Q6NZI2 390 aaKnown RBP12.42□□□□□ -0.42
RFX4-210ENST00000552773 LMBR1LQ6UX01 489 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 JCADQ9P266 1359 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 ZDHHC9Q9Y397 364 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 EYA2O00167 538 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 ZFYP08048 801 aaPredicted RBP12.42□□□□□ -0.42
RFX4-210ENST00000552773 TFCP2Q12800 502 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 CCDC57Q2TAC2 916 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 ZSCAN23Q3MJ62 389 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 HS1BP3Q53T59 392 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 USPL1Q5W0Q7 1092 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 PPP4R3CPQ6ZMV5 832 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 FAM184AQ8NB25 1140 aa12.42□□□□□ -0.42
RFX4-210ENST00000552773 CHMP3Q9Y3E7 222 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms