RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PHKA2P46019 1235 aa9.63□□□□□ -0.87
LIMA1-210ENST00000552045 ZNF280CQ8ND82 737 aa9.63□□□□□ -0.87
LIMA1-210ENST00000552045 KLRG1Q96E93 195 aa9.63□□□□□ -0.87
LIMA1-210ENST00000552045 CPNE3O75131 537 aaKnown RBP9.62□□□□□ -0.87
LIMA1-210ENST00000552045 TATP17735 454 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-210ENST00000552045 IDH3AP50213 366 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 CRELD1Q96HD1 420 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 HSH2DQ96JZ2 352 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 TGIF2Q9GZN2 237 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 POLMQ9NP87 494 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-210ENST00000552045 ANKIB1Q9P2G1 1089 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 SPG7Q9UQ90 795 aa9.61□□□□□ -0.87
LIMA1-210ENST00000552045 NRG2O14511 850 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-210ENST00000552045 CTSHP09668 335 aa9.6□□□□□ -0.87
LIMA1-210ENST00000552045 CTSOP43234 321 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-210ENST00000552045 XKR5Q6UX68 686 aa9.6□□□□□ -0.87
LIMA1-210ENST00000552045 LINC00528Q8N1L1 170 aa9.6□□□□□ -0.87
LIMA1-210ENST00000552045 UBXN4Q92575 508 aa9.6□□□□□ -0.87
LIMA1-210ENST00000552045 INPP5BP32019 993 aa9.59□□□□□ -0.87
LIMA1-210ENST00000552045 ARSDP51689 593 aa9.59□□□□□ -0.87
LIMA1-210ENST00000552045 LAPTM4AQ15012 233 aa9.59□□□□□ -0.87
LIMA1-210ENST00000552045 BICDL1Q6ZP65 573 aa9.59□□□□□ -0.87
LIMA1-210ENST00000552045 HPS1Q92902 700 aa9.59□□□□□ -0.87
LIMA1-210ENST00000552045 PPP1R1BQ9UD71 204 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-210ENST00000552045 FNDC3AQ9Y2H6 1198 aaKnown RBP9.59□□□□□ -0.87
LIMA1-210ENST00000552045 GFRA3O60609 400 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 TNFRSF21O75509 655 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 ATP4AP20648 1035 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 EIF4BP23588 611 aaKnown RBP9.58□□□□□ -0.88
LIMA1-210ENST00000552045 POU4F2Q12837 409 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIMA1-210ENST00000552045 NBPF10Q6P3W6 841 aaKnown RBP9.58□□□□□ -0.88
LIMA1-210ENST00000552045 BTLAQ7Z6A9 289 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 FOXD3Q9UJU5 478 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-210ENST00000552045 USP20Q9Y2K6 914 aa9.58□□□□□ -0.88
LIMA1-210ENST00000552045 RTCBQ9Y3I0 505 aaKnown RBP9.58□□□□□ -0.88
LIMA1-210ENST00000552045 UPP2O95045 317 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 WDR44Q5JSH3 913 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 USPL1Q5W0Q7 1092 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 PDE12Q6L8Q7 609 aaKnown RBP9.57□□□□□ -0.88
LIMA1-210ENST00000552045 SNX29Q8TEQ0 813 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 ZIC5Q96T25 663 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 TINF2Q9BSI4 451 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 CCSER2Q9H7U1 834 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 NEUROD4Q9HD90 331 aa9.57□□□□□ -0.88
LIMA1-210ENST00000552045 GIPC1O14908 333 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 TRIP4Q15650 581 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-210ENST00000552045 PRICKLE2Q7Z3G6 844 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 ZNF438Q7Z4V0 828 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 CMTR1Q8N1G2 835 aaKnown RBP9.56□□□□□ -0.88
LIMA1-210ENST00000552045 RNF217Q8TC41 542 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 CCDC74AQ96AQ1 378 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 ZFYVE28Q9HCC9 887 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 KCNMB2Q9Y691 235 aa9.56□□□□□ -0.88
LIMA1-210ENST00000552045 FAM187AA6NFU0 413 aa9.55□□□□□ -0.88
LIMA1-210ENST00000552045 UBAP1LF5GYI3 381 aa9.55□□□□□ -0.88
LIMA1-210ENST00000552045 CAPN5O15484 640 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-210ENST00000552045 PI16Q6UXB8 463 aa9.55□□□□□ -0.88
LIMA1-210ENST00000552045 SLC43A3Q8NBI5 491 aa9.55□□□□□ -0.88
LIMA1-210ENST00000552045 EPS8L3Q8TE67 593 aaKnown RBP9.55□□□□□ -0.88
LIMA1-210ENST00000552045 C12orf49Q9H741 205 aa9.55□□□□□ -0.88
LIMA1-210ENST00000552045 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-210ENST00000552045 DGAT1O75907 488 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 AVPP01185 164 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 ARSJQ5FYB0 599 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-210ENST00000552045 LRRC69Q6ZNQ3 347 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 LYSMD3Q7Z3D4 306 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 OSBPL7Q9BZF2 842 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 IRX2Q9BZI1 471 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-210ENST00000552045 ACBD3Q9H3P7 528 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 ELP3Q9H9T3 547 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 CAPN10Q9HC96 672 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 NLRP2Q9NX02 1062 aa9.54□□□□□ -0.88
LIMA1-210ENST00000552045 A0A1B0GTH6 734 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 PHACTR2O75167 634 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 BMP2P12643 396 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 IRS1P35568 1242 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 TANGO6Q9C0B7 1094 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 TMEM63CQ9P1W3 806 aa9.53□□□□□ -0.88
LIMA1-210ENST00000552045 MSX1P28360 303 aa9.52□□□□□ -0.89
LIMA1-210ENST00000552045 PKDCCQ504Y2 493 aa9.52□□□□□ -0.89
LIMA1-210ENST00000552045 TIMMDC1Q9NPL8 285 aa9.52□□□□□ -0.89
LIMA1-210ENST00000552045 USP31Q70CQ4 1352 aa9.51□□□□□ -0.89
LIMA1-210ENST00000552045 A0A1W2PNR3 127 aa9.51□□□□□ -0.89
LIMA1-210ENST00000552045 EPB42P16452 691 aa9.51□□□□□ -0.89
LIMA1-210ENST00000552045 GRNP28799 593 aaKnown RBP9.51□□□□□ -0.89
LIMA1-210ENST00000552045 PTPN12Q05209 780 aaKnown RBP9.51□□□□□ -0.89
LIMA1-210ENST00000552045 C6orf118Q5T5N4 469 aa9.51□□□□□ -0.89
LIMA1-210ENST00000552045 FAM8A1Q9UBU6 413 aa9.51□□□□□ -0.89
LIMA1-210ENST00000552045 DDX41Q9UJV9 622 aaKnown RBP9.51□□□□□ -0.89
LIMA1-210ENST00000552045 RHOQP17081 205 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 TNNI2P48788 182 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 TYRO3Q06418 890 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 GNL2Q13823 731 aaKnown RBP9.5□□□□□ -0.89
LIMA1-210ENST00000552045 HS2ST1Q7LGA3 356 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 NPHS2Q9NP85 383 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 PRKAG2Q9UGJ0 569 aa9.5□□□□□ -0.89
LIMA1-210ENST00000552045 XYLBO75191 536 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 SMCPP49901 116 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-210ENST00000552045 RACK1P63244 317 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms