RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 VEGFBP49765 207 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 EAPPQ56P03 285 aaPredicted RBP13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 CNTROBQ8N137 903 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 PNISRQ8TF01 805 aaKnown RBP13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 WBP1LQ9NX94 342 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 CLEC11AQ9Y240 323 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 NUP98P52948 1817 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 SNED1Q8TER0 1413 aa13.1□□□□□ -0.31
TRAFD1-207ENST00000550051 FAM177BA6PVY3 158 aa13.09□□□□□ -0.31
TRAFD1-207ENST00000550051 CTCFP49711 727 aaPredicted RBP13.09□□□□□ -0.31
TRAFD1-207ENST00000550051 JDP2Q8WYK2 163 aa13.09□□□□□ -0.31
TRAFD1-207ENST00000550051 MIS18AQ9NYP9 233 aa13.09□□□□□ -0.31
TRAFD1-207ENST00000550051 MAP3K15Q6ZN16 1313 aa13.09□□□□□ -0.31
TRAFD1-207ENST00000550051 RASSF10A6NK89 507 aa13.08□□□□□ -0.32
TRAFD1-207ENST00000550051 DEFB115Q30KQ5 88 aa13.08□□□□□ -0.32
TRAFD1-207ENST00000550051 EIF4A1P60842 406 aaKnown RBP13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 AIDAQ96BJ3 306 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 CRAMP1Q96RY5 1269 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 DLG5Q8TDM6 1919 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 RNF123Q5XPI4 1314 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 LAMB4A4D0S4 1761 aa13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 IBTKQ9P2D0 1353 aaPredicted RBP13.07□□□□□ -0.32
TRAFD1-207ENST00000550051 RIC1Q4ADV7 1423 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 NEFMP07197 916 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 EIF6P56537 245 aaKnown RBP13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 MAP1SQ66K74 1059 aaPredicted RBP13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 ZNF34Q8IZ26 560 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 NGEFQ8N5V2 710 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 PLEKHF1Q96S99 279 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 VPS33BQ9H267 617 aa13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 RRP7AQ9Y3A4 280 aaKnown RBP13.06□□□□□ -0.32
TRAFD1-207ENST00000550051 KDM3BQ7LBC6 1761 aa13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 MAP2K1Q02750 393 aaPredicted RBP13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 SUSD4Q5VX71 490 aa13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 KIF6Q6ZMV9 814 aa13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 TTLL7Q6ZT98 887 aa13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 RPGRQ92834 1020 aaKnown RBP13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 RBM17Q96I25 401 aaKnown RBP13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 DDX21Q9NR30 783 aaKnown RBP eCLIP13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 ABCC12Q96J65 1359 aa13.05□□□□□ -0.32
TRAFD1-207ENST00000550051 SLC10A5Q5PT55 438 aa13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 GIGYF2Q6Y7W6 1299 aaKnown RBP13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 USP50Q70EL3 339 aaPredicted RBP13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 ERBB4Q15303 1308 aa13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 UBN2Q6ZU65 1347 aa13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 WDR33Q9C0J8 1336 aaKnown RBP13.04□□□□□ -0.32
TRAFD1-207ENST00000550051 COL4A5P29400 1685 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 MYL6BP14649 208 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 GPTP24298 496 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 LMOD1P29536 600 aaPredicted RBP13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 EPS15P42566 896 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 SCNN1DP51172 638 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 LBX1P52954 281 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 NFE2L2Q16236 605 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 PPP1R42Q7Z4L9 355 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 LARGE2Q8N3Y3 721 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 PNNQ9H307 717 aaKnown RBP13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 GJA3Q9Y6H8 435 aa13.03□□□□□ -0.32
TRAFD1-207ENST00000550051 NTSR2O95665 410 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 POLA2Q14181 598 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 PARP10Q53GL7 1025 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 NLRP3Q96P20 1036 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 ZBTB3Q9H5J0 574 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 ABT1Q9ULW3 272 aaKnown RBP13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 LTBP1Q14766 1721 aa13.02□□□□□ -0.33
TRAFD1-207ENST00000550051 PPEF1O14829 653 aaPredicted RBP13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 HSPA8P11142 646 aaKnown RBP13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 CST9Q5W186 159 aa13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 LRP10Q7Z4F1 713 aa13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 ATP6V0A2Q9Y487 856 aa13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 TRPM7Q96QT4 1865 aa13.01□□□□□ -0.33
TRAFD1-207ENST00000550051 BBOX1O75936 387 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 ECE1P42892 770 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 MKRN4PQ13434 485 aaPredicted RBP13□□□□□ -0.33
TRAFD1-207ENST00000550051 PDIA6Q15084 440 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 C3orf67Q6ZVT6 689 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 NIM1KQ8IY84 436 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 THUMPD2Q9BTF0 503 aaKnown RBP13□□□□□ -0.33
TRAFD1-207ENST00000550051 RTFDC1Q9BY42 306 aaPredicted RBP13□□□□□ -0.33
TRAFD1-207ENST00000550051 TMX4Q9H1E5 349 aaPredicted RBP13□□□□□ -0.33
TRAFD1-207ENST00000550051 BABAM1Q9NWV8 329 aa13□□□□□ -0.33
TRAFD1-207ENST00000550051 ABCB7O75027 752 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 SP8Q8IXZ3 490 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 SUPT20HQ8NEM7 779 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 UTP14AQ9BVJ6 771 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 ADARB2Q9NS39 739 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 GPRC5DQ9NZD1 345 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 PGAP2Q9UHJ9 254 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 ZNRF3Q9ULT6 936 aa12.99□□□□□ -0.33
TRAFD1-207ENST00000550051 TCERG1O14776 1098 aaKnown RBP12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 PPIP5K2O43314 1243 aa12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 MAP2K2P36507 400 aa12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 FMR1Q06787 632 aaKnown RBP eCLIP12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 CXCL9Q07325 125 aa12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 CAPNS2Q96L46 248 aa12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 GPR101Q96P66 508 aaPredicted RBP12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 TLL2Q9Y6L7 1015 aa12.98□□□□□ -0.33
TRAFD1-207ENST00000550051 TRAF5O00463 557 aa12.97□□□□□ -0.33
TRAFD1-207ENST00000550051 AOC3Q16853 763 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms