RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RBM5P52756 815 aaKnown RBP eCLIP19.11■□□□□ 0.655e-8■■■□□ 16.8
CUX1-213ENST00000549414 TPM2P07951 284 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 AK2P54819 239 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 ANAPC15P60006 121 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 TFCP2Q12800 502 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 C8orf37Q96NL8 207 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 SERPINC1P01008 464 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 CDKL5O76039 1030 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 IPO7O95373 1038 aaKnown RBP19.1■□□□□ 0.65
CUX1-213ENST00000549414 GSPT1P15170 499 aaKnown RBP19.1■□□□□ 0.65
CUX1-213ENST00000549414 CDC42BPBQ9Y5S2 1711 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 DCAF5Q96JK2 942 aa19.1■□□□□ 0.65
CUX1-213ENST00000549414 MAP3K12Q12852 859 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 GIMAP6Q6P9H5 292 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 NDUFB9Q9Y6M9 179 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 TOM1O60784 492 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 ZSCAN22P10073 491 aaPredicted RBP19.09■□□□□ 0.65
CUX1-213ENST00000549414 HCLS1P14317 486 aaPredicted RBP19.09■□□□□ 0.65
CUX1-213ENST00000549414 CHST3Q7LGC8 479 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 ZPR1O75312 459 aa19.09■□□□□ 0.65
CUX1-213ENST00000549414 TSPOAP1O95153 1857 aa19.08■□□□□ 0.65
CUX1-213ENST00000549414 MICU3Q86XE3 530 aa19.08■□□□□ 0.65
CUX1-213ENST00000549414 CEP57L1Q8IYX8 460 aa19.08■□□□□ 0.65
CUX1-213ENST00000549414 POLR3DP05423 398 aaPredicted RBP19.08■□□□□ 0.65
CUX1-213ENST00000549414 EIF4A1P60842 406 aaKnown RBP19.08■□□□□ 0.65
CUX1-213ENST00000549414 HMGB1P09429 215 aaKnown RBP19.08■□□□□ 0.64
CUX1-213ENST00000549414 HELBQ8NG08 1087 aaPredicted RBP19.08■□□□□ 0.64
CUX1-213ENST00000549414 USP16Q9Y5T5 823 aa19.08■□□□□ 0.64
CUX1-213ENST00000549414 ABCC3O15438 1527 aa19.08■□□□□ 0.64
CUX1-213ENST00000549414 EFCAB6Q5THR3 1501 aa19.08■□□□□ 0.64
CUX1-213ENST00000549414 USP48Q86UV5 1035 aa19.08■□□□□ 0.64
CUX1-213ENST00000549414 USP44Q9H0E7 712 aa19.08■□□□□ 0.64
CUX1-213ENST00000549414 IL2RBP14784 551 aa19.07■□□□□ 0.64
CUX1-213ENST00000549414 TIMM10P62072 90 aa19.07■□□□□ 0.64
CUX1-213ENST00000549414 ZNF496Q96IT1 587 aaPredicted RBP19.07■□□□□ 0.64
CUX1-213ENST00000549414 TET3O43151 1660 aa19.07■□□□□ 0.64
CUX1-213ENST00000549414 SLC5A1P13866 664 aa19.07■□□□□ 0.64
CUX1-213ENST00000549414 NOC3LQ8WTT2 800 aaKnown RBP19.07■□□□□ 0.64
CUX1-213ENST00000549414 ZNF652Q9Y2D9 606 aa19.07■□□□□ 0.64
CUX1-213ENST00000549414 IFIT3O14879 490 aaKnown RBP19.06■□□□□ 0.64
CUX1-213ENST00000549414 RANBP6O60518 1105 aaKnown RBP19.06■□□□□ 0.64
CUX1-213ENST00000549414 DNM1Q05193 864 aaKnown RBP19.06■□□□□ 0.64
CUX1-213ENST00000549414 RTL1A6NKG5 1358 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 ATP2B3Q16720 1220 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 SLC4A8Q2Y0W8 1093 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 TEX13AQ9BXU3 409 aaPredicted RBP19.06■□□□□ 0.64
CUX1-213ENST00000549414 HECW2Q9P2P5 1572 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 TTC41PQ6P2S7 1318 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 SIRT1Q96EB6 747 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 MNS1Q8NEH6 495 aa19.06■□□□□ 0.64
CUX1-213ENST00000549414 A1BGP04217 495 aa19.05■□□□□ 0.64
CUX1-213ENST00000549414 HMGN5P82970 282 aaKnown RBP19.05■□□□□ 0.64
CUX1-213ENST00000549414 CAVIN4Q5BKX8 364 aa19.05■□□□□ 0.64
CUX1-213ENST00000549414 SUCLG2Q96I99 432 aa19.05■□□□□ 0.64
CUX1-213ENST00000549414 ORC3Q9UBD5 711 aaPredicted RBP19.05■□□□□ 0.64
CUX1-213ENST00000549414 CREB3L3Q68CJ9 461 aa19.05■□□□□ 0.64
CUX1-213ENST00000549414 FAM177A1Q8N128 213 aaPredicted RBP19.05■□□□□ 0.64
CUX1-213ENST00000549414 HMG20BQ9P0W2 317 aa19.05■□□□□ 0.64
CUX1-213ENST00000549414 IL15P40933 162 aaPredicted RBP19.04■□□□□ 0.64
CUX1-213ENST00000549414 MCMDC2Q4G0Z9 681 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 ZSCAN29Q8IWY8 852 aaPredicted RBP19.04■□□□□ 0.64
CUX1-213ENST00000549414 WWC3Q9ULE0 1092 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 BIN1O00499 593 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 Q6ZUG5 572 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 PRIM1P49642 420 aaKnown RBP19.04■□□□□ 0.64
CUX1-213ENST00000549414 FSIP1Q8NA03 581 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 FAM89AQ96GI7 184 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 FAM227BQ96M60 508 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 UBE2HP62256 183 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 CCDC129Q6ZRS4 1044 aa19.04■□□□□ 0.64
CUX1-213ENST00000549414 ARHGEF10O15013 1369 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 KIAA0232Q92628 1395 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 PDIA4P13667 645 aaKnown RBP19.03■□□□□ 0.64
CUX1-213ENST00000549414 UNC13BO14795 1591 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 DBNDD2Q9BQY9 259 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 PAG1Q9NWQ8 432 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 SLC12A7Q9Y666 1083 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 FAM135BQ49AJ0 1406 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 SHROOM2Q13796 1616 aa19.03■□□□□ 0.64
CUX1-213ENST00000549414 CROCC2H7BZ55 1655 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 MAP3K4Q9Y6R4 1608 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 KLF18A0A0U1RQI7 1052 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 GOLGA8AA7E2F4 631 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 TXLNAP40222 546 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 ZNF594Q96JF6 807 aaPredicted RBP19.02■□□□□ 0.64
CUX1-213ENST00000549414 ANKIB1Q9P2G1 1089 aa19.02■□□□□ 0.64
CUX1-213ENST00000549414 EDC3Q96F86 508 aaKnown RBP19.02■□□□□ 0.63
CUX1-213ENST00000549414 ISM2Q6H9L7 571 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 CFAP74Q9C0B2 1584 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 UQCRHLA0A096LP55 91 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 A0A0U1RQG5 324 aaPredicted RBP19.01■□□□□ 0.63
CUX1-213ENST00000549414 UQCRHP07919 91 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 SLC9C2Q5TAH2 1124 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 TMEM67Q5HYA8 995 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 CCDC171Q6TFL3 1326 aa19.01■□□□□ 0.63
CUX1-213ENST00000549414 F13A1P00488 732 aa19■□□□□ 0.63
CUX1-213ENST00000549414 SLC52A2Q9HAB3 445 aa19■□□□□ 0.63
CUX1-213ENST00000549414 AATKQ6ZMQ8 1374 aa19■□□□□ 0.63
CUX1-213ENST00000549414 ADCY5O95622 1261 aa19■□□□□ 0.63
CUX1-213ENST00000549414 ATP6V1AP38606 617 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms