RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 IARSP41252 1262 aaKnown RBP20.61■□□□□ 0.89
CHMP1A-206ENST00000549139 TPTE2Q6XPS3 522 aa20.61■□□□□ 0.89
CHMP1A-206ENST00000549139 ZNF652Q9Y2D9 606 aa20.61■□□□□ 0.89
CHMP1A-206ENST00000549139 GPC2Q8N158 579 aa20.6■□□□□ 0.89
CHMP1A-206ENST00000549139 SYNE4Q8N205 404 aa20.6■□□□□ 0.89
CHMP1A-206ENST00000549139 KDM3BQ7LBC6 1761 aa20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 MAP2K1Q02750 393 aaPredicted RBP20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 NEUROD2Q15784 382 aa20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 NIP7Q9Y221 180 aaKnown RBP eCLIP20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 RRP7AQ9Y3A4 280 aaKnown RBP20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 THSD7BQ9C0I4 1608 aa20.59■□□□□ 0.89
CHMP1A-206ENST00000549139 LTBP1Q14766 1721 aa20.58■□□□□ 0.89
CHMP1A-206ENST00000549139 COL4A5P29400 1685 aa20.58■□□□□ 0.89
CHMP1A-206ENST00000549139 SNRPA1P09661 255 aaKnown RBP20.58■□□□□ 0.89
CHMP1A-206ENST00000549139 PSMD1Q99460 953 aa20.58■□□□□ 0.89
CHMP1A-206ENST00000549139 THUMPD2Q9BTF0 503 aaKnown RBP20.58■□□□□ 0.89
CHMP1A-206ENST00000549139 APAF1O14727 1248 aa20.57■□□□□ 0.88
CHMP1A-206ENST00000549139 ALDH1B1P30837 517 aa20.57■□□□□ 0.88
CHMP1A-206ENST00000549139 DDX21Q9NR30 783 aaKnown RBP eCLIP20.57■□□□□ 0.88
CHMP1A-206ENST00000549139 TRIM35Q9UPQ4 493 aa20.57■□□□□ 0.88
CHMP1A-206ENST00000549139 FAM161AQ3B820 660 aa20.56■□□□□ 0.88
CHMP1A-206ENST00000549139 CRY2Q49AN0 593 aa20.56■□□□□ 0.88
CHMP1A-206ENST00000549139 MIS18AQ9NYP9 233 aa20.56■□□□□ 0.88
CHMP1A-206ENST00000549139 FAM177BA6PVY3 158 aa20.55■□□□□ 0.88
CHMP1A-206ENST00000549139 HLFQ16534 295 aa20.55■□□□□ 0.88
CHMP1A-206ENST00000549139 BABAM1Q9NWV8 329 aa20.55■□□□□ 0.88
CHMP1A-206ENST00000549139 ABT1Q9ULW3 272 aaKnown RBP20.55■□□□□ 0.88
CHMP1A-206ENST00000549139 FMR1Q06787 632 aaKnown RBP eCLIP20.54■□□□□ 0.88
CHMP1A-206ENST00000549139 SCNN1DP51172 638 aa20.53■□□□□ 0.88
CHMP1A-206ENST00000549139 JDP2Q8WYK2 163 aa20.53■□□□□ 0.88
CHMP1A-206ENST00000549139 ABCC12Q96J65 1359 aa20.53■□□□□ 0.88
CHMP1A-206ENST00000549139 TRPM7Q96QT4 1865 aa20.52■□□□□ 0.88
CHMP1A-206ENST00000549139 RGS19P49795 217 aa20.52■□□□□ 0.88
CHMP1A-206ENST00000549139 CAPNS2Q96L46 248 aa20.52■□□□□ 0.88
CHMP1A-206ENST00000549139 EPS15P42566 896 aa20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 EIF6P56537 245 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 EIF4A1P60842 406 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 CST9Q5W186 159 aa20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 CC2D2BQ6DHV5 1058 aa20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 GJA3Q9Y6H8 435 aa20.51■□□□□ 0.87
CHMP1A-206ENST00000549139 HOXA10P31260 410 aaPredicted RBP20.5■□□□□ 0.87
CHMP1A-206ENST00000549139 NCBP3Q53F19 620 aaKnown RBP20.5■□□□□ 0.87
CHMP1A-206ENST00000549139 TSPYL4Q9UJ04 414 aa20.5■□□□□ 0.87
CHMP1A-206ENST00000549139 NUP98P52948 1817 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 GTF2E1P29083 439 aaPredicted RBP20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 CYP4F22Q6NT55 531 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 SLC51AQ86UW1 340 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 NUTM1Q86Y26 1132 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 GPR101Q96P66 508 aaPredicted RBP20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 PDE4DIPQ5VU43 2346 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 LAMB4A4D0S4 1761 aa20.49■□□□□ 0.87
CHMP1A-206ENST00000549139 RIC1Q4ADV7 1423 aa20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 CHL1O00533 1208 aa20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 LMOD1P29536 600 aaPredicted RBP20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 ECE1P42892 770 aa20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 FAM9BQ8IZU0 186 aa20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 TLL2Q9Y6L7 1015 aa20.48■□□□□ 0.87
CHMP1A-206ENST00000549139 TRAF5O00463 557 aa20.47■□□□□ 0.87
CHMP1A-206ENST00000549139 GRIPAP1Q4V328 841 aa20.47■□□□□ 0.87
CHMP1A-206ENST00000549139 USP50Q70EL3 339 aaPredicted RBP20.47■□□□□ 0.87
CHMP1A-206ENST00000549139 NYXQ9GZU5 481 aa20.47■□□□□ 0.87
CHMP1A-206ENST00000549139 CCDC85CA6NKD9 419 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 ERVV-1B6SEH8 477 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 CCER2I3L3R5 266 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 CALD1Q05682 793 aaKnown RBP20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 CCDC27Q2M243 656 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 DIEXFQ68CQ4 756 aaKnown RBP20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 LARGE2Q8N3Y3 721 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 CFAP44Q96MT7 982 aa20.46■□□□□ 0.87
CHMP1A-206ENST00000549139 MLLT1Q03111 559 aaPredicted RBP20.45■□□□□ 0.86
CHMP1A-206ENST00000549139 PAXIP1Q6ZW49 1069 aaPredicted RBP20.45■□□□□ 0.86
CHMP1A-206ENST00000549139 BEGAINQ9BUH8 593 aa20.45■□□□□ 0.86
CHMP1A-206ENST00000549139 IBTKQ9P2D0 1353 aaPredicted RBP20.45■□□□□ 0.86
CHMP1A-206ENST00000549139 MAP2K2P36507 400 aa20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 CRAMP1Q96RY5 1269 aa20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 LAS1LQ9Y4W2 734 aaKnown RBP20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 CASP8AP2Q9UKL3 1982 aa20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 MAP3K15Q6ZN16 1313 aa20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 UBN2Q6ZU65 1347 aa20.44■□□□□ 0.86
CHMP1A-206ENST00000549139 AOC2O75106 756 aa20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 ZNF853P0CG23 659 aa20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 GRM1Q13255 1194 aa20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 TTLL7Q6ZT98 887 aa20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 RPGRQ92834 1020 aaKnown RBP20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 TSKSQ9UJT2 592 aa20.43■□□□□ 0.86
CHMP1A-206ENST00000549139 GNAI1P63096 354 aa20.42■□□□□ 0.86
CHMP1A-206ENST00000549139 SUSD4Q5VX71 490 aa20.42■□□□□ 0.86
CHMP1A-206ENST00000549139 C3orf67Q6ZVT6 689 aa20.42■□□□□ 0.86
CHMP1A-206ENST00000549139 SAPCD2Q86UD0 394 aa20.42■□□□□ 0.86
CHMP1A-206ENST00000549139 GPRC5DQ9NZD1 345 aa20.42■□□□□ 0.86
CHMP1A-206ENST00000549139 PPEF1O14829 653 aaPredicted RBP20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 WWC1Q8IX03 1113 aa20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 NIM1KQ8IY84 436 aa20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 NGEFQ8N5V2 710 aa20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 RBM17Q96I25 401 aaKnown RBP20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 ADARB2Q9NS39 739 aaKnown RBP20.41■□□□□ 0.86
CHMP1A-206ENST00000549139 IFT57Q9NWB7 429 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms