RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 BANK1Q8NDB2 785 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 KHSRPQ92945 711 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIMA1-204ENST00000549064 CDCA7LQ96GN5 454 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 COG3Q96JB2 828 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 PIM2Q9P1W9 311 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 MKRN1Q9UHC7 482 aaKnown RBP9.19□□□□□ -0.94
LIMA1-204ENST00000549064 ASAP1Q9ULH1 1129 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 COL5A3P25940 1745 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-204ENST00000549064 RTL1A6NKG5 1358 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 NUDT7P0C024 238 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 GYS1P13807 737 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 CHRNA5P30532 468 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 DIXDC1Q155Q3 683 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 DALRD3Q5D0E6 543 aaKnown RBP9.18□□□□□ -0.94
LIMA1-204ENST00000549064 TRAPPC3LQ5T215 181 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 MYH14Q7Z406 1995 aaKnown RBP9.18□□□□□ -0.94
LIMA1-204ENST00000549064 RIC3Q7Z5B4 369 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 NLGN1Q8N2Q7 840 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 PLSCR2Q9NRY7 297 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 TERF2IPQ9NYB0 399 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 FAM198AQ9UFP1 575 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 ZNF330Q9Y3S2 320 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-204ENST00000549064 PARP3Q9Y6F1 533 aa9.18□□□□□ -0.94
LIMA1-204ENST00000549064 SMG6Q86US8 1419 aaKnown RBP9.17□□□□□ -0.94
LIMA1-204ENST00000549064 RCCD1A6NED2 376 aa9.17□□□□□ -0.94
LIMA1-204ENST00000549064 VEGFAP15692 232 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-204ENST00000549064 CSPP1Q1MSJ5 1256 aa9.17□□□□□ -0.94
LIMA1-204ENST00000549064 SPIRE2Q8WWL2 714 aa9.17□□□□□ -0.94
LIMA1-204ENST00000549064 PCDH10Q9P2E7 1040 aa9.17□□□□□ -0.94
LIMA1-204ENST00000549064 RTCBQ9Y3I0 505 aaKnown RBP9.17□□□□□ -0.94
LIMA1-204ENST00000549064 KDRP35968 1356 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 GLTPD2A6NH11 291 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 POTEIP0CG38 1075 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 TMEM259Q4ZIN3 620 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 HSP90AB2PQ58FF8 381 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 SLC4A9Q96Q91 983 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 TMOD3Q9NYL9 352 aa9.16□□□□□ -0.94
LIMA1-204ENST00000549064 KDM6AO15550 1401 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-204ENST00000549064 VIRMAQ69YN4 1812 aaKnown RBP9.15□□□□□ -0.94
LIMA1-204ENST00000549064 POTECB2RU33 542 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 DDR1Q08345 913 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 ARSIQ5FYB1 569 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 PPP2R2DQ66LE6 453 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 NPM2Q86SE8 214 aaKnown RBP9.15□□□□□ -0.94
LIMA1-204ENST00000549064 MTMR14Q8NCE2 650 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 GDPD2Q9HCC8 539 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 PRDM10Q9NQV6 1147 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 ATG3Q9NT62 314 aa9.15□□□□□ -0.94
LIMA1-204ENST00000549064 ZNF831Q5JPB2 1677 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 CD46P15529 392 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 RFC4P35249 363 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 ABHD8Q96I13 439 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 GGNBP2Q9H3C7 697 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 SRP68Q9UHB9 627 aaKnown RBP9.14□□□□□ -0.95
LIMA1-204ENST00000549064 AFDNP55196 1824 aaKnown RBP9.14□□□□□ -0.95
LIMA1-204ENST00000549064 DLEC1Q9Y238 1755 aa9.14□□□□□ -0.95
LIMA1-204ENST00000549064 INSRP06213 1382 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 ZC3H4Q9UPT8 1303 aaKnown RBP9.13□□□□□ -0.95
LIMA1-204ENST00000549064 KIF20BQ96Q89 1820 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 DDX11L8A8MPP1 907 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 RPS6KA4O75676 772 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 POTEJP0CG39 1038 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 COL9A1P20849 921 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 CTCFP49711 727 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-204ENST00000549064 LBX1P52954 281 aa9.13□□□□□ -0.95
LIMA1-204ENST00000549064 DICER1Q9UPY3 1922 aaKnown RBP9.13□□□□□ -0.95
LIMA1-204ENST00000549064 CNTNAP1P78357 1384 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 MOXD2PA6NHM9 499 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 C3orf80F5H4A9 247 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 SPTLC1O15269 473 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 LMNB1P20700 586 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 RSBN1LQ6PCB5 846 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-204ENST00000549064 NUTM1Q86Y26 1132 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 SIN3AQ96ST3 1273 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 EYA1Q99502 592 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 ADAMTS7Q9UKP4 1686 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 FLT4P35916 1363 aa9.12□□□□□ -0.95
LIMA1-204ENST00000549064 CNTNAP4Q9C0A0 1308 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 NDUFV2P19404 249 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 ABL2P42684 1182 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 QPCTQ16769 361 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 RC3H1Q5TC82 1133 aaKnown RBP9.11□□□□□ -0.95
LIMA1-204ENST00000549064 AIDAQ96BJ3 306 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 SPG7Q9UQ90 795 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 NCAPD2Q15021 1401 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 TJP1Q07157 1748 aa9.11□□□□□ -0.95
LIMA1-204ENST00000549064 NFKBIEO00221 500 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 POLRMTO00411 1230 aaKnown RBP9.1□□□□□ -0.95
LIMA1-204ENST00000549064 FYB1O15117 783 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 PHKG2P15735 406 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 VEGFBP49765 207 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 MLLT1Q03111 559 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-204ENST00000549064 TRAIPQ9BWF2 469 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 CARD11Q9BXL7 1154 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 TSKSQ9UJT2 592 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 EMILIN1Q9Y6C2 1016 aa9.1□□□□□ -0.95
LIMA1-204ENST00000549064 USP42Q9H9J4 1324 aaKnown RBP9.09□□□□□ -0.95
LIMA1-204ENST00000549064 NRXN2Q9P2S2 1712 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 CCDC85CA6NKD9 419 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 AP1G2O75843 785 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms