RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 CNKSR1Q969H4 720 aa17.7■□□□□ 0.42
PRPF40B-207ENST00000548399 CDCA7LQ96GN5 454 aa17.7■□□□□ 0.42
PRPF40B-207ENST00000548399 TRMT112Q9UI30 125 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-207ENST00000548399 BRCA1P38398 1863 aaKnown RBP17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 DLEC1Q9Y238 1755 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 FLIIQ13045 1269 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 TRIM28Q13263 835 aaKnown RBP17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 KSR2Q6VAB6 950 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 G2E3Q7L622 706 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 MAP3K2Q9Y2U5 619 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 COL11A2P13942 1736 aaPredicted RBP17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 SH3TC1Q8TE82 1336 aa17.69■□□□□ 0.42
PRPF40B-207ENST00000548399 ANKRD36CQ5JPF3 1778 aa17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 PI4KAP2A4QPH2 592 aa17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 HNRNPUQ00839 825 aaKnown RBP eCLIP17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 PI4KAP1Q8N8J0 262 aa17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 MYD88Q99836 296 aa17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 METTL22Q9BUU2 404 aaPredicted RBP17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 ARFGEF2Q9Y6D5 1785 aa17.68■□□□□ 0.42
PRPF40B-207ENST00000548399 ADCY9O60503 1353 aa17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 FKBP5Q13451 457 aaPredicted RBP17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 CRY2Q49AN0 593 aa17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 SLC10A5Q5PT55 438 aa17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 PRPF40BQ6NWY9 871 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 RPGRQ92834 1020 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 NLRP3Q96P20 1036 aa17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 TNRC6CQ9HCJ0 1690 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 GOLGB1Q14789 3259 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-207ENST00000548399 NEXNQ0ZGT2 675 aa17.66■□□□□ 0.42
PRPF40B-207ENST00000548399 TRMT2AQ8IZ69 625 aaKnown RBP17.66■□□□□ 0.42
PRPF40B-207ENST00000548399 ZNF428Q96B54 188 aa17.66■□□□□ 0.42
PRPF40B-207ENST00000548399 HCLS1P14317 486 aaPredicted RBP17.65■□□□□ 0.42
PRPF40B-207ENST00000548399 ALDH1B1P30837 517 aa17.65■□□□□ 0.42
PRPF40B-207ENST00000548399 CCDC191Q8NCU4 936 aa17.65■□□□□ 0.42
PRPF40B-207ENST00000548399 CWC25Q9NXE8 425 aaPredicted RBP17.65■□□□□ 0.42
PRPF40B-207ENST00000548399 ARFGEF1Q9Y6D6 1849 aa17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 C21orf2O43822 256 aa17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 HOXA10P31260 410 aaPredicted RBP17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 C3orf67Q6ZVT6 689 aa17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 SYNE4Q8N205 404 aa17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 FAM89AQ96GI7 184 aa17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 ZNF219Q9P2Y4 722 aaPredicted RBP17.64■□□□□ 0.41
PRPF40B-207ENST00000548399 UTRNP46939 3433 aa17.63■□□□□ 0.41
PRPF40B-207ENST00000548399 SOGA3Q5TF21 947 aa17.63■□□□□ 0.41
PRPF40B-207ENST00000548399 ZBTB38Q8NAP3 1195 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-207ENST00000548399 RBM17Q96I25 401 aaKnown RBP17.63■□□□□ 0.41
PRPF40B-207ENST00000548399 HSP90B1P14625 803 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-207ENST00000548399 RTL5Q5HYW3 569 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-207ENST00000548399 DNAAF4Q8WXU2 420 aa17.62■□□□□ 0.41
PRPF40B-207ENST00000548399 IRS4O14654 1257 aaPredicted RBP17.61■□□□□ 0.41
PRPF40B-207ENST00000548399 IGKV5-2P06315 115 aa17.61■□□□□ 0.41
PRPF40B-207ENST00000548399 CT47B1P0C2W7 299 aaPredicted RBP17.61■□□□□ 0.41
PRPF40B-207ENST00000548399 CRAMP1Q96RY5 1269 aa17.61■□□□□ 0.41
PRPF40B-207ENST00000548399 CHD4Q14839 1912 aa17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 NEURL1BA8MQ27 555 aa17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 PCCAP05165 728 aaPredicted RBP17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 CWF19L2Q2TBE0 894 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 LINS1Q8NG48 757 aa17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 SSH1Q8WYL5 1049 aa17.6■□□□□ 0.41
PRPF40B-207ENST00000548399 RASSF7Q02833 373 aa17.59■□□□□ 0.41
PRPF40B-207ENST00000548399 ALDH1L2Q3SY69 923 aa17.59■□□□□ 0.41
PRPF40B-207ENST00000548399 CCDC93Q567U6 631 aa17.59■□□□□ 0.41
PRPF40B-207ENST00000548399 MRPL50Q8N5N7 158 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-207ENST00000548399 C7orf43Q8WVR3 580 aa17.59■□□□□ 0.41
PRPF40B-207ENST00000548399 F6X3S4 739 aa17.58■□□□□ 0.4
PRPF40B-207ENST00000548399 NFKBIEO00221 500 aa17.58■□□□□ 0.4
PRPF40B-207ENST00000548399 C9orf131Q5VYM1 1079 aa17.58■□□□□ 0.4
PRPF40B-207ENST00000548399 DDX46Q7L014 1031 aaKnown RBP17.58■□□□□ 0.4
PRPF40B-207ENST00000548399 SMC4Q9NTJ3 1288 aa17.58■□□□□ 0.4
PRPF40B-207ENST00000548399 ABCC4O15439 1325 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 ZBED9Q6R2W3 1325 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 SLX4Q8IY92 1834 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 PPEF1O14829 653 aaPredicted RBP17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 LMNB1P20700 586 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 GCKRQ14397 625 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 SF3B3Q15393 1217 aaKnown RBP17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 ZNF784Q8NCA9 323 aaPredicted RBP17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 JARID2Q92833 1246 aaPredicted RBP17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 BCL2L13Q9BXK5 485 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 TAOK3Q9H2K8 898 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 RNF181Q9P0P0 153 aa17.57■□□□□ 0.4
PRPF40B-207ENST00000548399 PTPRCP08575 1304 aa17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 CDHR2Q9BYE9 1310 aa17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 LTBP3Q9NS15 1303 aa17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 CC2D2BQ6DHV5 1058 aa17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 RTKN2Q8IZC4 609 aa17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 TMX4Q9H1E5 349 aaPredicted RBP17.56■□□□□ 0.4
PRPF40B-207ENST00000548399 CACNA1FO60840 1977 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 PDE8AO60658 829 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 BBOX1O75936 387 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 GRAPQ13588 217 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 BEND3Q5T5X7 828 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 SLC4A10Q6U841 1118 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 OLFM4Q6UX06 510 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 UBE3BQ7Z3V4 1068 aa17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 GRAPLQ8TC17 118 aaPredicted RBP17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 DDX60Q8IY21 1712 aaKnown RBP17.55■□□□□ 0.4
PRPF40B-207ENST00000548399 H7C1W4 665 aa17.54■□□□□ 0.4
PRPF40B-207ENST00000548399 LAMB2P55268 1798 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 CACNA1SQ13698 1873 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms