RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 HOXB7P09629 217 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 KRT24Q2M2I5 525 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 HSP90AB3PQ58FF7 597 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 CC2D2BQ6DHV5 1058 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 XAGE3Q8WTP9 111 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 NECTIN2Q92692 538 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 CFAP44Q96MT7 982 aa18.76■□□□□ 0.59
COL2A1-209ENST00000546974 UTP14AQ9BVJ6 771 aaKnown RBP18.76■□□□□ 0.59
COL2A1-209ENST00000546974 DDNO94850 711 aaPredicted RBP18.75■□□□□ 0.59
COL2A1-209ENST00000546974 SLC10A5Q5PT55 438 aa18.75■□□□□ 0.59
COL2A1-209ENST00000546974 RBM17Q96I25 401 aaKnown RBP18.75■□□□□ 0.59
COL2A1-209ENST00000546974 CRAMP1Q96RY5 1269 aa18.75■□□□□ 0.59
COL2A1-209ENST00000546974 PSMD1Q99460 953 aa18.75■□□□□ 0.59
COL2A1-209ENST00000546974 ZNF277Q9NRM2 450 aaPredicted RBP18.75■□□□□ 0.59
COL2A1-209ENST00000546974 RNF123Q5XPI4 1314 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 SNED1Q8TER0 1413 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 AIMP1Q12904 312 aaKnown RBP18.74■□□□□ 0.59
COL2A1-209ENST00000546974 GRIPAP1Q4V328 841 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 SYNE4Q8N205 404 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 NLRP3Q96P20 1036 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 PCNTO95613 3336 aa18.74■□□□□ 0.59
COL2A1-209ENST00000546974 SCN4AP35499 1836 aa18.73■□□□□ 0.59
COL2A1-209ENST00000546974 IARSP41252 1262 aaKnown RBP18.73■□□□□ 0.59
COL2A1-209ENST00000546974 TCIRG1Q13488 830 aa18.73■□□□□ 0.59
COL2A1-209ENST00000546974 HDGFL1Q5TGJ6 251 aa18.73■□□□□ 0.59
COL2A1-209ENST00000546974 APAF1O14727 1248 aa18.72■□□□□ 0.59
COL2A1-209ENST00000546974 HTRA3P83110 453 aa18.72■□□□□ 0.59
COL2A1-209ENST00000546974 C3orf67Q6ZVT6 689 aa18.72■□□□□ 0.59
COL2A1-209ENST00000546974 NLRP10Q86W26 655 aa18.72■□□□□ 0.59
COL2A1-209ENST00000546974 L3MBTL3Q96JM7 780 aaPredicted RBP18.72■□□□□ 0.59
COL2A1-209ENST00000546974 CHPF2Q9P2E5 772 aa18.72■□□□□ 0.59
COL2A1-209ENST00000546974 IQCA1LA6NCM1 817 aa18.71■□□□□ 0.59
COL2A1-209ENST00000546974 ZNF853P0CG23 659 aa18.71■□□□□ 0.59
COL2A1-209ENST00000546974 KLRG1Q96E93 195 aa18.71■□□□□ 0.59
COL2A1-209ENST00000546974 MBIPQ9NS73 344 aa18.71■□□□□ 0.59
COL2A1-209ENST00000546974 DBF4Q9UBU7 674 aaPredicted RBP18.71■□□□□ 0.59
COL2A1-209ENST00000546974 FZD9O00144 591 aa18.7■□□□□ 0.58
COL2A1-209ENST00000546974 PPEF1O14829 653 aaPredicted RBP18.7■□□□□ 0.58
COL2A1-209ENST00000546974 CALD1Q05682 793 aaKnown RBP18.7■□□□□ 0.58
COL2A1-209ENST00000546974 DUSP27Q5VZP5 1158 aa18.7■□□□□ 0.58
COL2A1-209ENST00000546974 LAMB2P55268 1798 aa18.69■□□□□ 0.58
COL2A1-209ENST00000546974 ZEB1P37275 1124 aaPredicted RBP18.69■□□□□ 0.58
COL2A1-209ENST00000546974 PLBD2Q8NHP8 589 aa18.69■□□□□ 0.58
COL2A1-209ENST00000546974 IFT57Q9NWB7 429 aa18.69■□□□□ 0.58
COL2A1-209ENST00000546974 HYPKQ9NX55 129 aa18.69■□□□□ 0.58
COL2A1-209ENST00000546974 ZNF541Q9H0D2 1346 aa18.69■□□□□ 0.58
COL2A1-209ENST00000546974 GNAI1P63096 354 aa18.68■□□□□ 0.58
COL2A1-209ENST00000546974 CHADLQ6NUI6 762 aa18.68■□□□□ 0.58
COL2A1-209ENST00000546974 ANKRD13DQ6ZTN6 518 aa18.68■□□□□ 0.58
COL2A1-209ENST00000546974 JDP2Q8WYK2 163 aa18.68■□□□□ 0.58
COL2A1-209ENST00000546974 TRMT112Q9UI30 125 aaKnown RBP18.68■□□□□ 0.58
COL2A1-209ENST00000546974 SH3TC1Q8TE82 1336 aa18.68■□□□□ 0.58
COL2A1-209ENST00000546974 TMX4Q9H1E5 349 aaPredicted RBP18.67■□□□□ 0.58
COL2A1-209ENST00000546974 TAF1DQ9H5J8 278 aaPredicted RBP18.67■□□□□ 0.58
COL2A1-209ENST00000546974 TCERG1O14776 1098 aaKnown RBP18.66■□□□□ 0.58
COL2A1-209ENST00000546974 BBOX1O75936 387 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 POTEIP0CG38 1075 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 POTEJP0CG39 1038 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 HCLS1P14317 486 aaPredicted RBP18.66■□□□□ 0.58
COL2A1-209ENST00000546974 JMYQ8N9B5 988 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 ATP6V0A2Q9Y487 856 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 ABCC4O15439 1325 aa18.66■□□□□ 0.58
COL2A1-209ENST00000546974 LDHDQ86WU2 507 aa18.65■□□□□ 0.58
COL2A1-209ENST00000546974 GPC2Q8N158 579 aa18.65■□□□□ 0.58
COL2A1-209ENST00000546974 ISCA1Q9BUE6 129 aa18.65■□□□□ 0.58
COL2A1-209ENST00000546974 VPS33BQ9H267 617 aa18.65■□□□□ 0.58
COL2A1-209ENST00000546974 HACL1Q9UJ83 578 aa18.65■□□□□ 0.58
COL2A1-209ENST00000546974 EIF6P56537 245 aaKnown RBP18.64■□□□□ 0.57
COL2A1-209ENST00000546974 DDX46Q7L014 1031 aaKnown RBP18.64■□□□□ 0.57
COL2A1-209ENST00000546974 SLC51AQ86UW1 340 aa18.64■□□□□ 0.57
COL2A1-209ENST00000546974 LARGE2Q8N3Y3 721 aa18.64■□□□□ 0.57
COL2A1-209ENST00000546974 COL4A5P29400 1685 aa18.63■□□□□ 0.57
COL2A1-209ENST00000546974 TRIM28Q13263 835 aaKnown RBP18.63■□□□□ 0.57
COL2A1-209ENST00000546974 SP8Q8IXZ3 490 aa18.63■□□□□ 0.57
COL2A1-209ENST00000546974 DDX60Q8IY21 1712 aaKnown RBP18.63■□□□□ 0.57
COL2A1-209ENST00000546974 EPHX2P34913 555 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 GRAPQ13588 217 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 CCDC184Q52MB2 194 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 SUPT20HQ8NEM7 779 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 GRAPLQ8TC17 118 aaPredicted RBP18.62■□□□□ 0.57
COL2A1-209ENST00000546974 CHMP4AQ9BY43 222 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 TAF1P21675 1872 aa18.62■□□□□ 0.57
COL2A1-209ENST00000546974 ATP5J2-PTCD1G3V325 749 aa18.61■□□□□ 0.57
COL2A1-209ENST00000546974 ELL2O00472 640 aaPredicted RBP18.61■□□□□ 0.57
COL2A1-209ENST00000546974 EAPPQ56P03 285 aaPredicted RBP18.61■□□□□ 0.57
COL2A1-209ENST00000546974 PNMA8AQ86V59 439 aaPredicted RBP18.61■□□□□ 0.57
COL2A1-209ENST00000546974 RTFDC1Q9BY42 306 aaPredicted RBP18.61■□□□□ 0.57
COL2A1-209ENST00000546974 PPIP5K2O43314 1243 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 GOLGA2Q08379 1002 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 CCDC27Q2M243 656 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 IFFO2Q5TF58 517 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 TMC4Q7Z404 712 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 RIC3Q7Z5B4 369 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 NIM1KQ8IY84 436 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 C8orf58Q8NAV2 365 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 FAM89AQ96GI7 184 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 CREBZFQ9NS37 354 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 GJA3Q9Y6H8 435 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 ADAMTSL1Q8N6G6 1762 aa18.6■□□□□ 0.57
COL2A1-209ENST00000546974 PASKQ96RG2 1323 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms