RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RCAN3Q9UKA8 241 aa17.47■□□□□ 0.39
PTCH1-213ENST00000546820 PDZRN3Q9UPQ7 1066 aa17.47■□□□□ 0.39
PTCH1-213ENST00000546820 IBTKQ9P2D0 1353 aaPredicted RBP17.46■□□□□ 0.39
PTCH1-213ENST00000546820 SYT17Q9BSW7 474 aa17.46■□□□□ 0.39
PTCH1-213ENST00000546820 SRCIN1Q9C0H9 1055 aa17.45■□□□□ 0.38
PTCH1-213ENST00000546820 SH3TC1Q8TE82 1336 aa17.45■□□□□ 0.38
PTCH1-213ENST00000546820 ARFGEF2Q9Y6D5 1785 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 NEURL1BA8MQ27 555 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 ALDH1L1O75891 902 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 NTSR2O95665 410 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 IGKV5-2P06315 115 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 ERFEQ4G0M1 354 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 BEND3Q5T5X7 828 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 ZKSCAN2Q63HK3 967 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 NUTM1Q86Y26 1132 aa17.44■□□□□ 0.38
PTCH1-213ENST00000546820 ZBTB38Q8NAP3 1195 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-213ENST00000546820 H0YIN7 160 aa17.43■□□□□ 0.38
PTCH1-213ENST00000546820 CWF19L2Q2TBE0 894 aaKnown RBP17.43■□□□□ 0.38
PTCH1-213ENST00000546820 SLC10A5Q5PT55 438 aa17.43■□□□□ 0.38
PTCH1-213ENST00000546820 CCDC24Q8N4L8 307 aa17.43■□□□□ 0.38
PTCH1-213ENST00000546820 NLRP3Q96P20 1036 aa17.43■□□□□ 0.38
PTCH1-213ENST00000546820 AFDNP55196 1824 aaKnown RBP17.42■□□□□ 0.38
PTCH1-213ENST00000546820 C10orf71Q711Q0 1435 aa17.42■□□□□ 0.38
PTCH1-213ENST00000546820 PCCAP05165 728 aaPredicted RBP17.42■□□□□ 0.38
PTCH1-213ENST00000546820 CCT4P50991 539 aaKnown RBP17.42■□□□□ 0.38
PTCH1-213ENST00000546820 GCKRQ14397 625 aa17.42■□□□□ 0.38
PTCH1-213ENST00000546820 ATF7IPQ6VMQ6 1270 aa17.42■□□□□ 0.38
PTCH1-213ENST00000546820 FAM89AQ96GI7 184 aa17.42■□□□□ 0.38
PTCH1-213ENST00000546820 ANKRD36CQ5JPF3 1778 aa17.42■□□□□ 0.38
PTCH1-213ENST00000546820 NRXN2Q9P2S2 1712 aa17.41■□□□□ 0.38
PTCH1-213ENST00000546820 MS4A1P11836 297 aa17.41■□□□□ 0.38
PTCH1-213ENST00000546820 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-213ENST00000546820 C9orf78Q9NZ63 289 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-213ENST00000546820 A0A0G2JLW4 131 aa17.4■□□□□ 0.38
PTCH1-213ENST00000546820 DCAF8L1A6NGE4 600 aa17.4■□□□□ 0.38
PTCH1-213ENST00000546820 RTL5Q5HYW3 569 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-213ENST00000546820 C2CD5Q86YS7 1000 aa17.4■□□□□ 0.38
PTCH1-213ENST00000546820 KLRG2A4D1S0 409 aaPredicted RBP17.39■□□□□ 0.37
PTCH1-213ENST00000546820 H7C1W4 665 aa17.39■□□□□ 0.37
PTCH1-213ENST00000546820 IRS4O14654 1257 aaPredicted RBP17.39■□□□□ 0.37
PTCH1-213ENST00000546820 HCLS1P14317 486 aaPredicted RBP17.39■□□□□ 0.37
PTCH1-213ENST00000546820 DPEP1P16444 411 aa17.39■□□□□ 0.37
PTCH1-213ENST00000546820 TRIM27P14373 513 aa17.38■□□□□ 0.37
PTCH1-213ENST00000546820 FTSJ3Q8IY81 847 aaKnown RBP17.38■□□□□ 0.37
PTCH1-213ENST00000546820 SYNE4Q8N205 404 aa17.38■□□□□ 0.37
PTCH1-213ENST00000546820 NLGN2Q8NFZ4 835 aa17.38■□□□□ 0.37
PTCH1-213ENST00000546820 ZNF622Q969S3 477 aaKnown RBP eCLIP17.38■□□□□ 0.37
PTCH1-213ENST00000546820 PIM2Q9P1W9 311 aa17.38■□□□□ 0.37
PTCH1-213ENST00000546820 GRM8O00222 908 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 PDE8AO60658 829 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 SRGNP10124 158 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 NPR1P16066 1061 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 CHRNA5P30532 468 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 ALDH1B1P30837 517 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 UBE3BQ7Z3V4 1068 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 DZIP1LQ8IYY4 767 aaKnown RBP17.37■□□□□ 0.37
PTCH1-213ENST00000546820 RPGRQ92834 1020 aaKnown RBP17.37■□□□□ 0.37
PTCH1-213ENST00000546820 CLUAP1Q96AJ1 413 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 MASTLQ96GX5 879 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 HDAC5Q9UQL6 1122 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 CDHR2Q9BYE9 1310 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 KIF13BQ9NQT8 1826 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 RIC1Q4ADV7 1423 aa17.37■□□□□ 0.37
PTCH1-213ENST00000546820 INTS3Q68E01 1043 aaKnown RBP17.36■□□□□ 0.37
PTCH1-213ENST00000546820 STYK1Q6J9G0 422 aa17.36■□□□□ 0.37
PTCH1-213ENST00000546820 JARID2Q92833 1246 aaPredicted RBP17.36■□□□□ 0.37
PTCH1-213ENST00000546820 CNKSR1Q969H4 720 aa17.36■□□□□ 0.37
PTCH1-213ENST00000546820 KCNA3P22001 575 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 CRY2Q49AN0 593 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 TTLL6Q8N841 843 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 RBM17Q96I25 401 aaKnown RBP17.35■□□□□ 0.37
PTCH1-213ENST00000546820 ABCC4O15439 1325 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 ABCC12Q96J65 1359 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 PXDNLA1KZ92 1463 aa17.35■□□□□ 0.37
PTCH1-213ENST00000546820 SF3B3Q15393 1217 aaKnown RBP17.34■□□□□ 0.37
PTCH1-213ENST00000546820 DALRD3Q5D0E6 543 aaKnown RBP17.34■□□□□ 0.37
PTCH1-213ENST00000546820 HOXA10P31260 410 aaPredicted RBP17.33■□□□□ 0.36
PTCH1-213ENST00000546820 GPR162Q16538 588 aa17.33■□□□□ 0.36
PTCH1-213ENST00000546820 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.36
PTCH1-213ENST00000546820 DDX46Q7L014 1031 aaKnown RBP17.33■□□□□ 0.36
PTCH1-213ENST00000546820 PELP1Q8IZL8 1130 aaKnown RBP17.33■□□□□ 0.36
PTCH1-213ENST00000546820 PLA2G12BQ9BX93 195 aa17.33■□□□□ 0.36
PTCH1-213ENST00000546820 USP44Q9H0E7 712 aa17.33■□□□□ 0.36
PTCH1-213ENST00000546820 UTYO14607 1347 aa17.32■□□□□ 0.36
PTCH1-213ENST00000546820 GNAI3P08754 354 aa17.32■□□□□ 0.36
PTCH1-213ENST00000546820 CASP7P55210 303 aa17.32■□□□□ 0.36
PTCH1-213ENST00000546820 CRAMP1Q96RY5 1269 aa17.32■□□□□ 0.36
PTCH1-213ENST00000546820 BCS1LQ9Y276 419 aa17.32■□□□□ 0.36
PTCH1-213ENST00000546820 ANKRD31Q8N7Z5 1873 aa17.31■□□□□ 0.36
PTCH1-213ENST00000546820 PLIN1O60240 522 aa17.31■□□□□ 0.36
PTCH1-213ENST00000546820 TMEM57Q8N5G2 664 aa17.31■□□□□ 0.36
PTCH1-213ENST00000546820 TMX4Q9H1E5 349 aaPredicted RBP17.31■□□□□ 0.36
PTCH1-213ENST00000546820 N4BP2Q86UW6 1770 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-213ENST00000546820 GRIN3BO60391 1043 aa17.3■□□□□ 0.36
PTCH1-213ENST00000546820 BBOX1O75936 387 aa17.3■□□□□ 0.36
PTCH1-213ENST00000546820 NBPF7P0C2Y1 421 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-213ENST00000546820 UBTFL1P0CB47 393 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-213ENST00000546820 CTSWP56202 376 aa17.3■□□□□ 0.36
PTCH1-213ENST00000546820 PDE3AQ14432 1141 aa17.3■□□□□ 0.36
PTCH1-213ENST00000546820 C3orf67Q6ZVT6 689 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms